Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   PWP91_RS00030 Genome accession   NZ_CP118738
Coordinates   5678..6169 (-) Length   163 a.a.
NCBI ID   WP_274998654.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 678..11169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS00030 (PWP91_00030) comX 5678..6169 (-) 492 WP_274998654.1 sigma-70 family RNA polymerase sigma factor Regulator
  PWP91_RS00035 (PWP91_00035) ezrA 6426..8156 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  PWP91_RS00040 (PWP91_00040) tsf 8361..9389 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  PWP91_RS00045 (PWP91_00045) rpsB 9510..10277 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19761.60 Da        Isoelectric Point: 5.8980

>NTDB_id=794786 PWP91_RS00030 WP_274998654.1 5678..6169(-) (comX) [Lactococcus lactis strain P-1]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTRKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=794786 PWP91_RS00030 WP_274998654.1 5678..6169(-) (comX) [Lactococcus lactis strain P-1]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACAAGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.773

100

0.988
  comX Lactococcus lactis subsp. cremoris KW2

75.46

100

0.755