Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWO95_RS01195 Genome accession   NZ_CP118737
Coordinates   258174..258725 (+) Length   183 a.a.
NCBI ID   WP_002828738.1    Uniprot ID   C5RAY6
Organism   Weissella paramesenteroides strain FL3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 253174..263725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO95_RS01170 (PWO95_01170) purR 253303..254151 (+) 849 WP_002828743.1 pur operon repressor -
  PWO95_RS01175 (PWO95_01175) glmU 254173..255555 (+) 1383 WP_002828742.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  PWO95_RS01180 (PWO95_01180) - 255680..256666 (+) 987 WP_040760995.1 ribose-phosphate diphosphokinase -
  PWO95_RS01185 (PWO95_01185) - 256733..257677 (+) 945 WP_002828740.1 nucleoside hydrolase -
  PWO95_RS01190 (PWO95_01190) rpsF 257804..258103 (+) 300 WP_002828739.1 30S ribosomal protein S6 -
  PWO95_RS01195 (PWO95_01195) ssb 258174..258725 (+) 552 WP_002828738.1 single-stranded DNA-binding protein Machinery gene
  PWO95_RS01200 (PWO95_01200) rpsR 258782..259024 (+) 243 WP_002828737.1 30S ribosomal protein S18 -
  PWO95_RS01205 (PWO95_01205) - 259124..259591 (+) 468 WP_002828736.1 hypothetical protein -
  PWO95_RS01210 (PWO95_01210) purE 259858..260349 (+) 492 WP_275016822.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PWO95_RS01215 (PWO95_01215) purK 260342..261463 (+) 1122 WP_002828733.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PWO95_RS01220 (PWO95_01220) purC 261466..262203 (+) 738 WP_002828732.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  PWO95_RS01225 (PWO95_01225) purS 262205..262468 (+) 264 WP_140837207.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  PWO95_RS01230 (PWO95_01230) purQ 262465..263151 (+) 687 WP_140837205.1 phosphoribosylformylglycinamidine synthase subunit PurQ -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19776.29 Da        Isoelectric Point: 4.7513

>NTDB_id=794763 PWO95_RS01195 WP_002828738.1 258174..258725(+) (ssb) [Weissella paramesenteroides strain FL3]
MINRVVLVGRLTRDVELRYTTSGAAVGSFTIAVNRQFTNANGERDTDFINAVIWRKSAENFANFTSKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEARRSQSGSNNTNNFGGGQQRSQGNFNSSSSQNPFGAPASSGNVFNGGSAN
SQSSNDPFGGGQEIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=794763 PWO95_RS01195 WP_002828738.1 258174..258725(+) (ssb) [Weissella paramesenteroides strain FL3]
ATGATAAATCGTGTTGTTCTGGTTGGTCGTTTGACACGTGATGTTGAATTACGTTATACGACTTCTGGTGCTGCTGTTGG
TTCATTTACAATTGCCGTTAATCGACAATTTACAAATGCTAACGGTGAGCGTGATACTGATTTTATTAATGCTGTCATTT
GGCGTAAGTCAGCAGAAAATTTTGCTAATTTTACATCAAAAGGTTCGTTAGTTGGTATTGAAGGCCGTATTCAAACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTATGTCACGGAAGTCGTCGTTGATAACTTCTCATTGTTAGAAAGTCGTGC
TGAAAGTGAAGCACGCCGTTCTCAGAGTGGTTCAAATAATACGAATAATTTTGGTGGTGGACAGCAACGTAGCCAAGGAA
ACTTTAATTCCTCATCATCACAAAACCCATTTGGTGCACCAGCATCTAGTGGTAATGTGTTTAATGGTGGTTCAGCTAAT
TCACAATCATCAAATGATCCTTTCGGTGGTGGTCAAGAGATTGATATCTCTGATGATGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5RAY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.761

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.63

100

0.519