Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   PW252_RS11200 Genome accession   NZ_CP118735
Coordinates   2303730..2304488 (+) Length   252 a.a.
NCBI ID   WP_105124974.1    Uniprot ID   -
Organism   Streptococcus iners strain 29887     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2298730..2309488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS11185 (PW252_11180) - 2301119..2301793 (-) 675 WP_316716792.1 YoaK family protein -
  PW252_RS11190 (PW252_11185) rlmH 2301818..2302297 (-) 480 WP_105118495.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PW252_RS11195 (PW252_11190) htrA 2302489..2303664 (+) 1176 WP_248049105.1 S1C family serine protease Regulator
  PW252_RS11200 (PW252_11195) spo0J 2303730..2304488 (+) 759 WP_105124974.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28860.30 Da        Isoelectric Point: 9.9279

>NTDB_id=794761 PW252_RS11200 WP_105124974.1 2303730..2304488(+) (spo0J) [Streptococcus iners strain 29887]
MEELRTINISDIQPNPYQPRIHFDQNKLEELAQSIKENGLIQPIIVRKSSIIGYELLAGERRWRASQLAGLTAIPAIVKE
LSDDDLLYQAIIENLQRSDLNPIEEATSYQKLLSKGLKHDEIAQIMGKSRPYISNLLRLLNLSKETQQAIKEGKISQGHA
RQLVAFSEVKQATWVQEIIEKDLSVRALEKILSKKKKIKTQPKNQFLKEQENILNQLLGTSTKILQKKNGNGEIRISFNS
LEEFERIINNLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=794761 PW252_RS11200 WP_105124974.1 2303730..2304488(+) (spo0J) [Streptococcus iners strain 29887]
ATGGAAGAACTACGTACTATCAATATTTCAGATATCCAGCCAAATCCTTACCAACCAAGAATACATTTTGACCAAAATAA
GCTAGAAGAATTAGCTCAGTCTATAAAAGAAAACGGATTGATCCAACCAATCATTGTAAGAAAGTCGTCCATTATTGGTT
ATGAACTATTAGCAGGTGAGAGAAGATGGAGAGCTAGTCAATTAGCTGGATTAACAGCAATTCCCGCTATCGTCAAAGAA
TTGAGTGATGATGATTTGCTCTATCAAGCAATCATTGAAAATTTACAGCGTTCAGATTTAAATCCTATCGAAGAAGCAAC
ATCCTATCAAAAACTACTCAGCAAGGGATTGAAGCATGATGAAATTGCTCAAATCATGGGAAAATCAAGACCTTATATCA
GTAACTTACTACGTTTATTAAATCTTTCTAAAGAAACACAGCAAGCAATAAAAGAAGGAAAAATTTCGCAAGGCCACGCG
CGTCAGTTAGTTGCATTTTCAGAAGTAAAGCAAGCTACTTGGGTTCAGGAAATCATCGAAAAAGATCTAAGTGTGCGGGC
TCTTGAAAAAATTCTATCCAAGAAGAAAAAAATAAAGACACAACCAAAAAATCAATTTCTAAAAGAACAAGAAAACATTC
TCAATCAACTTCTAGGAACCTCCACAAAAATTCTTCAGAAAAAAAATGGCAATGGAGAAATTCGAATCAGCTTTAATAGC
CTTGAAGAATTTGAGCGAATTATCAACAATTTAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(145-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.336

100

0.556