Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   PW252_RS05820 Genome accession   NZ_CP118735
Coordinates   1178914..1180140 (+) Length   408 a.a.
NCBI ID   WP_248050103.1    Uniprot ID   A0AA97A1S6
Organism   Streptococcus iners strain 29887     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173914..1185140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS05795 (PW252_05795) - 1174932..1176188 (-) 1257 WP_316716633.1 ISL3 family transposase -
  PW252_RS05800 (PW252_05800) - 1176434..1176712 (+) 279 WP_172073537.1 hypothetical protein -
  PW252_RS05805 (PW252_05805) - 1176725..1177027 (+) 303 WP_248050110.1 hypothetical protein -
  PW252_RS05810 (PW252_05810) - 1177080..1177919 (+) 840 WP_248050108.1 thymidylate synthase -
  PW252_RS05815 (PW252_05815) - 1178204..1178716 (+) 513 WP_248050106.1 dihydrofolate reductase -
  PW252_RS05820 (PW252_05820) clpX 1178914..1180140 (+) 1227 WP_248050103.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  PW252_RS05825 (PW252_05825) yihA 1180202..1180789 (+) 588 WP_100881361.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PW252_RS05830 (PW252_05830) ndk 1180799..1181212 (+) 414 WP_100881362.1 nucleoside-diphosphate kinase -
  PW252_RS05835 (PW252_05835) lepA 1181307..1183139 (+) 1833 WP_105117046.1 translation elongation factor 4 -
  PW252_RS05840 (PW252_05840) - 1183193..1183477 (+) 285 WP_105124579.1 hypothetical protein -
  PW252_RS11320 - 1183663..1183806 (+) 144 WP_330847369.1 IS3 family transposase -
  PW252_RS05845 (PW252_05845) - 1183894..1184076 (-) 183 WP_024413156.1 4-oxalocrotonate tautomerase -
  PW252_RS05850 (PW252_05850) - 1184199..1184423 (+) 225 WP_248050101.1 hypothetical protein -
  PW252_RS05855 (PW252_05855) - 1184522..1185097 (+) 576 WP_248050099.1 thymidine kinase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45339.81 Da        Isoelectric Point: 4.5644

>NTDB_id=794740 PW252_RS05820 WP_248050103.1 1178914..1180140(+) (clpX) [Streptococcus iners strain 29887]
MAVKHNHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKDSYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPSQDDVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=794740 PW252_RS05820 WP_248050103.1 1178914..1180140(+) (clpX) [Streptococcus iners strain 29887]
ATGGCTGTTAAGCATAACCATGAGTTAATTTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTAAAAAAAATTATCGC
TGGAAACAATGTGTTCATCTGTAATGAATGTGTGGAGCTGGCTCAGGAAATTATTCGCGAAGAATTGGCAGAAGAAGTAT
TGACTGACCTGGCTGACACTCCAAAGCCACAGGAATTACTCAATATTTTAAACAATTATGTTATCGGACAGGACCGTGCT
AAACGCGCCTTGGCAGTAGCAGTCTACAACCACTACAAGCGGATAAATTTCCAGGATAGCCGTGATGAGAATGATGTTGA
TCTGCAAAAATCAAACATCCTGATGATTGGTCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTGGAAAATATCCTT
CTTAAACTCTTGCAGGCGGCAGATTTTAACATTGACCGCGCAGAACGAGGGATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTTTCGGGTGAAGGTGTCCAACAGGCTCTCTTGAAAATCATTG
AGGGAACAGTTGCCAGCGTGCCACCACAAGGCGGACGCAAGCATCCTAACCAAGAAATGATCCATGTGGATACAAAAAAC
ATTCTATTCATCGTAGGTGGTGCTTTTGACGGGATTGAGGAAATTGTCAAGCAACGTCTAGGTGAGAAAATCATCGGTTT
CGGTCAAAACAATCGTGCTATTGATGAAAAAGATTCTTACATGCAACACATCATTGCTGATGATATTCAAAAGTTTGGTA
TCATTCCAGAATTGATTGGTCGCTTGCCTGTATTTGCGGCTTTAGACCAGTTAACAACCGAGGACTTGGTGCGTATTTTG
ACGGAACCTAAGAATGCTCTGGTTAAACAATACCAAACCCTCTTGTCTTACGATGATGTAGAGTTGGATTTTGATGAGGA
TGCCTTGTTGGCCATTGCTGAGAAGGCGATTGAGCGGAAAACAGGAGCGCGTGGACTTCGTTCTATTATCGAAGAAACCA
TGTTGGATGTCATGTTTGAAGTTCCAAGTCAAGATGACGTCAAACGTGTTCGTGTTACAAAAGCAGCAGTAGATGGCAAG
GAAAAACCATTGCTAGAAACTGCCTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

84.198

99.265

0.836
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.529

0.576