Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SKTS_RS13490 Genome accession   NZ_AP022853
Coordinates   2771094..2771879 (+) Length   261 a.a.
NCBI ID   WP_173065969.1    Uniprot ID   A0A6F8VDJ9
Organism   Sulfurimicrobium lacus strain skT11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2766094..2776879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKTS_RS13470 (SKTS_26360) - 2768160..2768381 (+) 222 WP_173065957.1 hypothetical protein -
  SKTS_RS13475 (SKTS_26370) - 2768319..2769098 (-) 780 WP_173065960.1 ZIP family metal transporter -
  SKTS_RS13480 (SKTS_26380) pgeF 2769186..2770103 (-) 918 WP_173065963.1 peptidoglycan editing factor PgeF -
  SKTS_RS13485 (SKTS_26390) rluD 2770100..2771074 (-) 975 WP_342342992.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SKTS_RS13490 (SKTS_26400) comL 2771094..2771879 (+) 786 WP_173065969.1 outer membrane protein assembly factor BamD Machinery gene
  SKTS_RS13495 (SKTS_26410) - 2771933..2772271 (-) 339 WP_173065971.1 P-II family nitrogen regulator -
  SKTS_RS13500 (SKTS_26420) - 2772285..2773892 (-) 1608 WP_173065974.1 NAD+ synthase -
  SKTS_RS13505 (SKTS_26430) - 2773967..2775028 (-) 1062 WP_173065977.1 carboxysome shell carbonic anhydrase domain-containg protein -
  SKTS_RS13510 (SKTS_26440) cobC 2775151..2775753 (-) 603 WP_173065980.1 alpha-ribazole phosphatase -
  SKTS_RS13515 (SKTS_26450) - 2775780..2776703 (-) 924 WP_173065983.1 CobD/CbiB family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29709.65 Da        Isoelectric Point: 8.3249

>NTDB_id=79473 SKTS_RS13490 WP_173065969.1 2771094..2771879(+) (comL) [Sulfurimicrobium lacus strain skT11]
MKRSLALILLLLVTGCGLLPEVQDETKGWSAQKLYSEAKNEMNDGNYSKAIKYFETLEARYPYGRYAQQSQLEEAYAYFK
DNEPVSAIAACDRFIKLHPNHPNVDYAYYLKGLANFNEDLGLLGAIADQDLSERDPKAAKDSFEAFRELVTRFPKSKYAP
DAAARMKYLVNTLAASDVHIARYYARRGAYVAAVNRAQIVLQEYPQTPATEEALAIMVQSYDAMGLNDLRDDTRRVLSKN
YPNSKFLNGSSQSKKPWWRLW

Nucleotide


Download         Length: 786 bp        

>NTDB_id=79473 SKTS_RS13490 WP_173065969.1 2771094..2771879(+) (comL) [Sulfurimicrobium lacus strain skT11]
ATGAAGCGTAGTTTAGCGTTAATTCTGCTGTTGCTGGTGACCGGTTGCGGTCTGCTTCCCGAAGTCCAGGACGAAACCAA
GGGCTGGTCGGCGCAAAAGCTCTACAGCGAAGCCAAGAACGAGATGAATGATGGCAACTACAGCAAGGCCATCAAGTATT
TCGAAACACTCGAGGCACGCTACCCCTACGGACGCTATGCACAGCAGTCGCAACTTGAAGAAGCCTATGCCTACTTCAAG
GACAACGAGCCGGTTTCCGCCATCGCCGCCTGCGACCGTTTCATCAAGCTGCACCCCAATCATCCCAACGTCGACTACGC
CTACTACCTGAAAGGGCTAGCCAACTTCAACGAGGACCTGGGCCTGCTCGGCGCAATCGCCGACCAGGATCTGTCCGAAC
GCGACCCCAAGGCCGCCAAGGATTCGTTCGAAGCGTTCAGGGAGCTGGTCACACGCTTCCCCAAGAGCAAATACGCTCCT
GATGCCGCGGCGCGGATGAAATACCTGGTCAACACACTGGCCGCCAGCGACGTGCATATCGCACGTTACTACGCACGGCG
CGGCGCCTATGTGGCTGCGGTCAACCGTGCACAAATCGTGCTGCAGGAATACCCGCAGACCCCCGCCACGGAAGAAGCGC
TGGCGATCATGGTGCAGTCCTACGACGCCATGGGTTTGAATGACTTGCGCGACGATACGCGCCGGGTGCTGAGCAAGAAC
TACCCGAACAGCAAATTCCTGAACGGCTCCAGCCAGAGCAAGAAGCCTTGGTGGCGTCTCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8VDJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

50

100

0.51
  comL Neisseria gonorrhoeae MS11

48.872

100

0.498

Multiple sequence alignment