Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   PW220_RS10315 Genome accession   NZ_CP118734
Coordinates   2054753..2055511 (+) Length   252 a.a.
NCBI ID   WP_105118497.1    Uniprot ID   A0AA96VHK5
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2049753..2060511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS10300 (PW220_10305) - 2052142..2052816 (-) 675 WP_105118494.1 YoaK family protein -
  PW220_RS10305 (PW220_10310) rlmH 2052841..2053320 (-) 480 WP_105118495.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PW220_RS10310 (PW220_10315) htrA 2053512..2054687 (+) 1176 WP_248055862.1 S1C family serine protease Regulator
  PW220_RS10315 (PW220_10320) spo0J 2054753..2055511 (+) 759 WP_105118497.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28876.35 Da        Isoelectric Point: 9.9276

>NTDB_id=794707 PW220_RS10315 WP_105118497.1 2054753..2055511(+) (spo0J) [Streptococcus iners subsp. hyiners strain 29892]
MEELRTINISDIQPNPYQPRIHFDQNKLEELAQSIKENGLIQPIIVRKSSIIGYELLAGERRWRASQLAGLTAIPAIVKE
LSDDDLLYQAIIENLQRSDLNPIEEATSYQKLLSKGLKHDEIAQIMGKSRPYISNLLRLLNLSKETQQAIKEGKISQGHA
RQLVAFSEVKQATWVQEIIEKDLSVRALEKILSKKKKIKTQPKNQFLKEQEDLLTRLLGTSTKILQKKNGNGEIRISFNS
LEEFERIINNLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=794707 PW220_RS10315 WP_105118497.1 2054753..2055511(+) (spo0J) [Streptococcus iners subsp. hyiners strain 29892]
ATGGAAGAACTACGTACTATCAATATTTCAGATATTCAGCCAAATCCTTACCAACCAAGAATACATTTTGACCAAAATAA
GCTAGAAGAATTAGCTCAGTCTATAAAAGAAAACGGATTGATCCAACCAATCATTGTAAGAAAGTCGTCCATTATTGGTT
ATGAACTATTAGCAGGTGAGAGAAGATGGAGAGCTAGTCAATTAGCTGGATTAACAGCAATTCCCGCTATCGTCAAAGAA
TTGAGTGATGATGATTTGCTCTATCAGGCAATCATTGAAAATTTACAGCGTTCAGATTTAAATCCTATCGAAGAAGCAAC
ATCCTATCAAAAACTACTCAGCAAGGGATTGAAGCATGATGAAATTGCTCAAATCATGGGAAAATCAAGACCTTATATCA
GTAACTTACTACGTTTATTAAATCTTTCTAAAGAAACACAGCAAGCAATAAAAGAAGGAAAAATTTCGCAAGGCCACGCG
CGTCAGTTAGTTGCATTTTCAGAAGTAAAGCAAGCTACTTGGGTTCAGGAAATCATCGAAAAAGATCTAAGTGTGCGGGC
TCTTGAAAAAATTCTATCCAAGAAGAAAAAAATAAAGACACAACCAAAAAATCAATTTCTCAAGGAGCAAGAAGACTTAC
TGACCAGACTACTGGGAACCTCTACAAAAATTCTTCAGAAAAAAAATGGCAATGGAGAAATTCGAATCAGCTTTAATAGC
CTTGAAGAATTTGAGCGAATTATCAACAATTTAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(145-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.941

100

0.552