Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   PW220_RS05415 Genome accession   NZ_CP118734
Coordinates   1073536..1074762 (-) Length   408 a.a.
NCBI ID   WP_248054132.1    Uniprot ID   A0AA96VEA6
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068536..1079762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS05380 (PW220_05385) - 1068579..1069154 (-) 576 WP_172050828.1 thymidine kinase -
  PW220_RS05385 (PW220_05390) - 1069253..1069477 (-) 225 WP_248054144.1 hypothetical protein -
  PW220_RS05390 (PW220_05395) - 1069600..1069782 (+) 183 WP_024413156.1 4-oxalocrotonate tautomerase -
  PW220_RS10360 - 1069870..1069968 (-) 99 Protein_1030 IS3 family transposase -
  PW220_RS05395 (PW220_05400) - 1070199..1070483 (-) 285 WP_172050830.1 hypothetical protein -
  PW220_RS05400 (PW220_05405) lepA 1070537..1072369 (-) 1833 WP_248054142.1 translation elongation factor 4 -
  PW220_RS05405 (PW220_05410) ndk 1072464..1072877 (-) 414 WP_248054134.1 nucleoside-diphosphate kinase -
  PW220_RS05410 (PW220_05415) yihA 1072887..1073474 (-) 588 WP_100881361.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PW220_RS05415 (PW220_05420) clpX 1073536..1074762 (-) 1227 WP_248054132.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  PW220_RS05420 (PW220_05425) - 1074960..1075472 (-) 513 WP_248054130.1 dihydrofolate reductase -
  PW220_RS05425 (PW220_05430) - 1075770..1076609 (-) 840 WP_248054128.1 thymidylate synthase -
  PW220_RS05430 (PW220_05435) - 1076662..1076964 (-) 303 WP_248054127.1 hypothetical protein -
  PW220_RS05435 (PW220_05440) - 1076977..1077255 (-) 279 WP_248054121.1 hypothetical protein -
  PW220_RS05440 (PW220_05445) - 1077383..1078771 (-) 1389 WP_248054119.1 glycosyltransferase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45323.81 Da        Isoelectric Point: 4.5673

>NTDB_id=794692 PW220_RS05415 WP_248054132.1 1073536..1074762(-) (clpX) [Streptococcus iners subsp. hyiners strain 29892]
MAVKHNHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKDSYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDEVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=794692 PW220_RS05415 WP_248054132.1 1073536..1074762(-) (clpX) [Streptococcus iners subsp. hyiners strain 29892]
ATGGCTGTTAAGCATAACCATGAGTTAATTTATTGCTCATTTTGCGGGAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
TGGAAACAATGTGTTCATCTGTAATGAATGTGTGGAATTAGCTCAGGAAATCATTCGTGAGGAATTGGCAGAAGAAGTAT
TAACTGACCTGGCTGACACTCCTAAACCACAGGAATTACTCAATATTTTAAACAATTATGTTATCGGACAAGACCGTGCT
AAACGTGCCTTGGCAGTAGCTGTTTACAATCACTACAAGCGTATCAATTTCCAGGATAGCCGTGATGAGAATGATGTTGA
TCTGCAAAAATCAAACATCCTGATGATTGGTCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTGGAAAATATCCTT
CTTAAACTCTTGCAGGCAGCGGATTTTAACATTGATCGTGCTGAGAGAGGAATTATCTATGTGGACGAAATTGATAAGAT
TGCCAAGAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAACAGGCTCTTTTGAAAATTATCG
AGGGAACGGTTGCCAGTGTTCCACCGCAAGGCGGACGCAAGCATCCTAACCAAGAAATGATCCATGTGGATACCAAAAAC
ATTTTATTCATCGTAGGTGGTGCTTTTGACGGGATTGAGGAAATTGTCAAGCAACGTCTAGGTGAAAAAATCATCGGTTT
CGGTCAAAACAATCGTGCCATTGATGAAAAAGATTCTTACATGCAACACATCATTGCTGATGATATTCAAAAATTTGGTA
TCATTCCAGAATTGATTGGTCGCTTGCCTGTATTTGCAGCTTTAGACCAGTTAACAACTGAGGATTTGGTTCGTATCTTG
ACGGAGCCTAAGAATGCATTGGTTAAACAATACCAAACCCTCTTATCTTATGATGATGTAGAGTTGGATTTTGACGAGGA
TGCCTTGTTGGCCATTGCTGAGAAAGCGATTGAGCGGAAAACAGGAGCGCGTGGACTTCGTTCCATTATTGAAGAAACCA
TGTTGGATGTCATGTTTGAAGTTCCAGGTCAAGATGAAGTCAAACGTGTGCGAGTGACAAAAGCAGCAGTTGATGGTAAG
GAAAAACCATTGCTAGAAACTGCCTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.704

99.265

0.831
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574