Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   PXH68_RS07315 Genome accession   NZ_CP118733
Coordinates   1596426..1597115 (-) Length   229 a.a.
NCBI ID   WP_158456760.1    Uniprot ID   A0AA96ZYS9
Organism   Streptococcus suivaginalis strain 29896     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591426..1602115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS07290 (PXH68_07290) - 1591864..1592577 (-) 714 WP_248028610.1 NADPH-dependent oxidoreductase -
  PXH68_RS07295 (PXH68_07295) dnaI 1592574..1593473 (-) 900 WP_248028611.1 primosomal protein DnaI -
  PXH68_RS07300 (PXH68_07300) - 1593470..1594630 (-) 1161 WP_248028633.1 replication initiation/membrane attachment protein -
  PXH68_RS07305 (PXH68_07305) nrdR 1594637..1595107 (-) 471 WP_158456756.1 transcriptional regulator NrdR -
  PXH68_RS07310 (PXH68_07310) - 1595200..1596324 (-) 1125 WP_248028612.1 AI-2E family transporter -
  PXH68_RS07315 (PXH68_07315) covR 1596426..1597115 (-) 690 WP_158456760.1 DNA-binding response regulator Regulator
  PXH68_RS07320 (PXH68_07320) gndA 1597196..1598623 (-) 1428 WP_248028613.1 NADP-dependent phosphogluconate dehydrogenase -
  PXH68_RS07325 (PXH68_07325) - 1598713..1599261 (-) 549 WP_248028614.1 YceD family protein -
  PXH68_RS07330 (PXH68_07330) trxB 1599271..1600188 (-) 918 WP_248028615.1 thioredoxin-disulfide reductase -
  PXH68_RS07335 (PXH68_07335) - 1600201..1600425 (-) 225 WP_398582977.1 DUF4059 family protein -
  PXH68_RS07340 (PXH68_07340) - 1600444..1601787 (-) 1344 WP_205031464.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26233.13 Da        Isoelectric Point: 5.7384

>NTDB_id=794644 PXH68_RS07315 WP_158456760.1 1596426..1597115(-) (covR) [Streptococcus suivaginalis strain 29896]
MAKKILIAGRERNLSHFVSMELQKQDYLVDYASTGKEALQLAHETDFDLILMSFQLADMGSRELSLELLRSKPASVIIVA
VDSSEVAQHGQDILTYAVSYVVKPFVISDLVEQVTAIFKGRDFIDENCRQIKLHAAYRDLKIDFQNRTVTRAGELVNLTR
REYDLLATLMYSPEILSREQLLERVWKYDTAVETNVVDVYIRYLRGKLDVPGQDSYIKTVRGVGYAMRE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=794644 PXH68_RS07315 WP_158456760.1 1596426..1597115(-) (covR) [Streptococcus suivaginalis strain 29896]
ATGGCAAAGAAAATTTTGATTGCAGGTCGTGAGCGCAATCTATCCCACTTTGTTTCCATGGAATTGCAGAAACAAGATTA
TTTGGTGGATTACGCTTCGACAGGGAAGGAGGCCTTGCAGCTGGCCCATGAAACTGATTTTGATTTGATTTTGATGAGTT
TTCAGTTGGCAGACATGGGGAGCCGGGAACTTTCCTTGGAACTCTTGCGGTCAAAACCTGCCTCTGTCATCATCGTTGCA
GTCGATAGTTCAGAAGTCGCTCAGCATGGACAGGATATTTTGACCTACGCAGTTTCTTATGTTGTCAAACCCTTTGTAAT
CAGCGACTTGGTAGAACAGGTGACAGCAATCTTTAAGGGGCGTGACTTCATTGATGAAAACTGCCGTCAAATCAAGCTAC
ATGCTGCCTATCGTGACTTGAAGATCGACTTTCAAAATCGGACAGTCACACGGGCTGGCGAGCTGGTCAATCTAACCAGA
AGAGAATACGACCTTCTGGCAACCCTTATGTATAGTCCAGAGATTCTCAGCCGTGAGCAACTCTTGGAACGGGTTTGGAA
ATATGACACCGCCGTAGAAACGAATGTGGTAGATGTCTATATCCGATATTTGAGAGGGAAATTGGATGTTCCGGGACAGG
ACTCCTATATCAAGACCGTTCGTGGTGTTGGCTATGCTATGAGAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.707

100

0.493
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

100

0.45