Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   PXH68_RS05855 Genome accession   NZ_CP118733
Coordinates   1258514..1258801 (-) Length   95 a.a.
NCBI ID   WP_248028431.1    Uniprot ID   A0AA96VCT5
Organism   Streptococcus suivaginalis strain 29896     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1253514..1263801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS05830 (PXH68_05830) prsA 1253674..1254663 (-) 990 WP_205031264.1 peptidylprolyl isomerase PrsA -
  PXH68_RS05835 (PXH68_05835) - 1254724..1255443 (-) 720 WP_248028425.1 O-methyltransferase -
  PXH68_RS05840 (PXH68_05840) - 1255520..1256062 (-) 543 WP_158457032.1 hypothetical protein -
  PXH68_RS05845 (PXH68_05845) - 1256112..1256588 (-) 477 WP_248028427.1 hypothetical protein -
  PXH68_RS05850 (PXH68_05850) pepF 1256591..1258393 (-) 1803 WP_248028429.1 oligoendopeptidase F Regulator
  PXH68_RS05855 (PXH68_05855) HI0659 1258514..1258801 (-) 288 WP_248028431.1 helix-turn-helix domain-containing protein Machinery gene
  PXH68_RS05860 (PXH68_05860) - 1258791..1259156 (-) 366 WP_248028433.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PXH68_RS05865 (PXH68_05865) coiA 1259208..1260155 (-) 948 WP_248028434.1 competence protein CoiA Machinery gene
  PXH68_RS05870 (PXH68_05870) - 1260216..1260782 (+) 567 WP_248028436.1 GNAT family N-acetyltransferase -
  PXH68_RS05875 (PXH68_05875) metG 1260812..1262815 (-) 2004 WP_248028438.1 methionine--tRNA ligase -
  PXH68_RS05880 (PXH68_05880) - 1262970..1263563 (+) 594 WP_248028439.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10415.97 Da        Isoelectric Point: 5.8471

>NTDB_id=794632 PXH68_RS05855 WP_248028431.1 1258514..1258801(-) (HI0659) [Streptococcus suivaginalis strain 29896]
MENSAIGTNWQSVRSELFSAEEILESDLRVAIMSALIKARHEQGVSQKRLEELSGVSQPVIARMETGKTNPQLDTVLKVL
ASLGKTLAVVPLENR

Nucleotide


Download         Length: 288 bp        

>NTDB_id=794632 PXH68_RS05855 WP_248028431.1 1258514..1258801(-) (HI0659) [Streptococcus suivaginalis strain 29896]
ATGGAAAATAGTGCAATTGGTACTAACTGGCAATCGGTTCGGTCGGAACTCTTTAGTGCGGAAGAGATTCTAGAAAGTGA
TTTGCGTGTGGCTATTATGAGCGCGCTCATAAAGGCAAGGCATGAGCAGGGAGTAAGCCAGAAAAGACTGGAGGAATTAA
GTGGAGTGAGCCAACCAGTTATTGCCAGAATGGAGACAGGCAAAACCAATCCGCAATTGGATACCGTCTTGAAGGTTTTA
GCTAGCTTAGGAAAAACCCTAGCCGTTGTTCCCTTAGAGAATAGATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.427

93.684

0.547