Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PXH68_RS05850 Genome accession   NZ_CP118733
Coordinates   1256591..1258393 (-) Length   600 a.a.
NCBI ID   WP_248028429.1    Uniprot ID   A0AA96VDN0
Organism   Streptococcus suivaginalis strain 29896     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251591..1263393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS05825 (PXH68_05825) - 1252994..1253479 (-) 486 WP_248028424.1 LURP-one-related/scramblase family protein -
  PXH68_RS05830 (PXH68_05830) prsA 1253674..1254663 (-) 990 WP_205031264.1 peptidylprolyl isomerase PrsA -
  PXH68_RS05835 (PXH68_05835) - 1254724..1255443 (-) 720 WP_248028425.1 O-methyltransferase -
  PXH68_RS05840 (PXH68_05840) - 1255520..1256062 (-) 543 WP_158457032.1 hypothetical protein -
  PXH68_RS05845 (PXH68_05845) - 1256112..1256588 (-) 477 WP_248028427.1 hypothetical protein -
  PXH68_RS05850 (PXH68_05850) pepF 1256591..1258393 (-) 1803 WP_248028429.1 oligoendopeptidase F Regulator
  PXH68_RS05855 (PXH68_05855) HI0659 1258514..1258801 (-) 288 WP_248028431.1 helix-turn-helix domain-containing protein Machinery gene
  PXH68_RS05860 (PXH68_05860) - 1258791..1259156 (-) 366 WP_248028433.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PXH68_RS05865 (PXH68_05865) coiA 1259208..1260155 (-) 948 WP_248028434.1 competence protein CoiA Machinery gene
  PXH68_RS05870 (PXH68_05870) - 1260216..1260782 (+) 567 WP_248028436.1 GNAT family N-acetyltransferase -
  PXH68_RS05875 (PXH68_05875) metG 1260812..1262815 (-) 2004 WP_248028438.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68875.96 Da        Isoelectric Point: 4.4931

>NTDB_id=794631 PXH68_RS05850 WP_248028429.1 1256591..1258393(-) (pepF) [Streptococcus suivaginalis strain 29896]
MSQQRHEIEEKYQWDLATIFPTDEAWEAELAELQVETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKALALYSAFSQAFAFYEPEFMAITEEQLEAFKAAEPALSQYSHQFEKLLAAKDHILSQEVEEVLAAT
SEIFDAPSETFSVLDNASLRFPEIADEDGKLVPLSHGNYISFMESKNREVRQEAYEALYETYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALSANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSSTDTKVTYEEALA
TCADTLDIFGDEYAAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQN
QPYVYGHYSIFLAEIASTTNENLLTEKLLAEVEDDKTRFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNQLYGELNEKYYGLSAEENPLIQYEWARIPHFYYNFYVYQYSTGFAAASALADKIVNGSPEDKENYLNYLKAGSSDYPL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=794631 PXH68_RS05850 WP_248028429.1 1256591..1258393(-) (pepF) [Streptococcus suivaginalis strain 29896]
ATGTCACAACAACGTCATGAAATCGAAGAAAAATACCAGTGGGATTTGGCCACTATTTTCCCAACAGATGAGGCTTGGGA
AGCTGAGTTGGCTGAACTCCAAGTAGAAACAGAAAAGACAAAGGAGTTTGCAGGCCATTTGCTAGACTCTGCTAAGAGCC
TCTTGGAAATTAGTGAAACCCAGCTTGGCCTCATGCGTCGCATTGAAAAGCTCTATGTCTATGCGTCCATGAAGAACGAC
CAGGACACTCGTGAAGGCAAGTATCAGGAGTTTCAAGCCAAGGCTTTGGCCCTTTATTCAGCCTTTTCACAAGCCTTCGC
CTTCTATGAGCCAGAATTTATGGCGATTACTGAGGAGCAACTGGAAGCCTTCAAGGCAGCAGAGCCAGCACTGAGTCAGT
ACAGCCATCAATTTGAAAAACTCTTGGCAGCCAAGGATCATATCTTGTCACAGGAAGTAGAAGAGGTTCTAGCGGCGACC
AGCGAGATTTTTGATGCCCCGTCTGAAACCTTCTCTGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGCAAGTTGGTGCCTCTCTCTCACGGCAACTATATCTCCTTCATGGAGTCCAAAAACCGTGAAGTGCGTCAAGAGG
CCTATGAGGCACTCTACGAAACCTACGAGCAGTTCCAGCATACCTACGCTAAGACCCTCCAGTCTAACGTTAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGACTCTGCCCGTCACGCAGCCCTTTCTGCCAACTTTATTCCAGAGTCCGTTTA
CGATACATTAGTGTCAGCAGTCAACAAGCACCTCCCGCTCTTGCACCGCTACATCAATTTGCGTAAGAAACTCTTGGGAA
TCGATGATCTCAAGATGTACGATATGTACACACCACTTTCGAGCACAGATACAAAAGTCACCTATGAAGAGGCCCTGGCT
ACCTGTGCCGATACATTGGATATCTTTGGTGATGAGTATGCGGCCATTGTCAAAGAAGCCTTTGAAAACCGCTGGATTGA
CGTCCATGTCAACGAAGGCAAGCGTTCAGGAGCTTATTCAGGTGGTGCTTATGACACTAATGCCTTCATGCTCCTCAACT
GGCAGGACAACTTGGACAATATGTACACCCTGATTCATGAAACAGGGCATTCGCTCCATTCTATGTTGACTCGTCAGAAC
CAGCCTTATGTCTATGGTCACTATTCAATTTTCTTGGCGGAGATTGCTTCCACCACCAACGAAAATCTCTTGACAGAGAA
GCTCTTGGCCGAAGTCGAAGACGACAAGACCCGCTTTGCTATTCTCAACCACTACCTAGACGGTTTCCGTGGCACTGTCT
TCCGTCAAACCCAGTTTGCAGAGTTTGAGCAGGCTATTTACAAAGCAGACCAAGAAGGTCAGGTCTTGACAGCGGACTTC
CTCAACCAGCTCTATGGTGAGCTCAACGAGAAGTATTACGGCTTGTCTGCGGAAGAAAATCCACTGATTCAGTACGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTTTACCAATATTCAACTGGCTTTGCGGCAGCGTCTGCTTTGGCAG
ACAAGATTGTCAATGGTAGCCCAGAGGATAAGGAAAACTACCTCAACTACCTTAAGGCAGGTAGCTCTGATTACCCACTC
AATGTCATTGCAAAAGCTGGCGTGGATATGACCAAGGAAGACTATCTCAATGATGCCTTCAAGGTCTTTGAAGCCCGCCT
GACAGAGTTGGAAGCTCTTGTTGAGAAAGGTGTGCACCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69

100

0.69