Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SKTS_RS01200 Genome accession   NZ_AP022853
Coordinates   248170..248535 (-) Length   121 a.a.
NCBI ID   WP_173068798.1    Uniprot ID   -
Organism   Sulfurimicrobium lacus strain skT11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 243170..253535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKTS_RS01185 (SKTS_02330) - 245054..247189 (-) 2136 WP_173059149.1 methyl-accepting chemotaxis protein -
  SKTS_RS01190 (SKTS_02340) - 247245..247769 (-) 525 WP_173059152.1 chemotaxis protein CheW -
  SKTS_RS01195 (SKTS_02350) - 247784..248149 (-) 366 WP_173059155.1 response regulator -
  SKTS_RS01200 (SKTS_02360) pilG 248170..248535 (-) 366 WP_173068798.1 twitching motility response regulator PilG Regulator
  SKTS_RS01205 (SKTS_02370) - 248803..249687 (+) 885 WP_173059158.1 substrate-binding domain-containing protein -
  SKTS_RS01210 (SKTS_02380) thiD 249753..250574 (+) 822 WP_173059161.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SKTS_RS01215 (SKTS_02390) thiE 250567..251208 (+) 642 WP_173059164.1 thiamine phosphate synthase -
  SKTS_RS01220 (SKTS_02400) hemL 251216..252499 (+) 1284 WP_173059167.1 glutamate-1-semialdehyde 2,1-aminomutase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13674.87 Da        Isoelectric Point: 8.0232

>NTDB_id=79460 SKTS_RS01200 WP_173068798.1 248170..248535(-) (pilG) [Sulfurimicrobium lacus strain skT11]
MVIDDSNTIRRSAEIFLLKSGCEVILAEDGFDAMAKITDYQPDIIFVDIMMPRLDGYQTTMLIKKNPRFKHTPVIMLSSK
DGLFDRARGRMVGSDEYLTKPFTKDSLLEAVRKHTTARSGA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=79460 SKTS_RS01200 WP_173068798.1 248170..248535(-) (pilG) [Sulfurimicrobium lacus strain skT11]
ATGGTGATTGACGACAGCAATACCATCCGCCGCAGCGCCGAAATCTTCCTGTTGAAATCCGGTTGCGAAGTCATTCTGGC
TGAAGACGGCTTCGACGCCATGGCCAAGATTACCGACTACCAGCCCGACATCATCTTCGTCGACATCATGATGCCACGTC
TCGACGGCTATCAAACCACAATGCTGATCAAGAAAAACCCCCGCTTCAAGCACACGCCCGTCATCATGCTCTCCAGCAAG
GACGGGCTGTTCGACCGTGCACGAGGCAGGATGGTCGGCTCGGACGAATACCTCACCAAGCCCTTCACCAAGGACAGTCT
GCTGGAAGCCGTCCGCAAACACACAACCGCCCGAAGCGGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.521

96.694

0.653
  vicR Streptococcus mutans UA159

39.474

94.215

0.372

Multiple sequence alignment