Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PWJ66_RS22735 Genome accession   NZ_CP118714
Coordinates   4586819..4587391 (-) Length   190 a.a.
NCBI ID   WP_208704926.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain G5.M11b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4581819..4592391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWJ66_RS22715 (PWJ66_22650) rplI 4582948..4583394 (-) 447 WP_036121876.1 50S ribosomal protein L9 -
  PWJ66_RS22720 (PWJ66_22655) - 4583394..4585364 (-) 1971 WP_036121881.1 DHH family phosphoesterase -
  PWJ66_RS22725 (PWJ66_22660) - 4585378..4586319 (-) 942 WP_036121884.1 YybS family protein -
  PWJ66_RS22730 (PWJ66_22665) rpsR 4586544..4586780 (-) 237 WP_004233359.1 30S ribosomal protein S18 -
  PWJ66_RS22735 (PWJ66_22670) ssbA 4586819..4587391 (-) 573 WP_208704926.1 single-stranded DNA-binding protein Machinery gene
  PWJ66_RS22740 (PWJ66_22675) rpsF 4587438..4587725 (-) 288 WP_008177955.1 30S ribosomal protein S6 -
  PWJ66_RS22745 (PWJ66_22680) - 4587904..4588488 (+) 585 WP_274993551.1 DUF3267 domain-containing protein -
  PWJ66_RS22750 (PWJ66_22685) - 4588530..4589570 (-) 1041 WP_036147831.1 acyl-CoA dehydrogenase -
  PWJ66_RS22755 (PWJ66_22690) ychF 4589653..4590753 (-) 1101 WP_008177960.1 redox-regulated ATPase YchF -
  PWJ66_RS22760 (PWJ66_22695) - 4590851..4591051 (-) 201 WP_008177961.1 DUF951 domain-containing protein -
  PWJ66_RS22765 (PWJ66_22700) - 4591053..4591925 (-) 873 WP_036121904.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20646.63 Da        Isoelectric Point: 4.7719

>NTDB_id=794519 PWJ66_RS22735 WP_208704926.1 4586819..4587391(-) (ssbA) [Lysinibacillus fusiformis strain G5.M11b]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGGDAYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=794519 PWJ66_RS22735 WP_208704926.1 4586819..4587391(-) (ssbA) [Lysinibacillus fusiformis strain G5.M11b]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCGGAGCTCCTGCTCCTCAATACGGTGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGGCGATGCTTATCAGCAAAATCAACCACCT
ATGAATCAGCCAAACTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGATGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.789

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

48.421

100

0.484