Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QQN98_RS17985 Genome accession   NZ_CP132019
Coordinates   3764511..3765248 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JCH767     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3759511..3770248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQN98_RS17970 (QQN98_17970) clpC 3759965..3762538 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QQN98_RS17975 (QQN98_17975) yfiH 3762668..3763399 (-) 732 WP_001551518.1 purine nucleoside phosphorylase YfiH -
  QQN98_RS17980 (QQN98_17980) rluD 3763396..3764376 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQN98_RS17985 (QQN98_17985) comL 3764511..3765248 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QQN98_RS17990 (QQN98_17990) raiA 3765519..3765860 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QQN98_RS17995 (QQN98_17995) pheL 3765964..3766011 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QQN98_RS18000 (QQN98_18000) pheA 3766110..3767270 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  QQN98_RS18005 (QQN98_18005) tyrA 3767313..3768434 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QQN98_RS18010 (QQN98_18010) aroF 3768445..3769515 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QQN98_RS18015 (QQN98_18015) yfiL 3769724..3770089 (+) 366 WP_019842457.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=794483 QQN98_RS17985 WP_000197686.1 3764511..3765248(+) (comL) [Escherichia coli strain JCH767]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=794483 QQN98_RS17985 WP_000197686.1 3764511..3765248(+) (comL) [Escherichia coli strain JCH767]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376