Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PYG29_RS09820 Genome accession   NZ_CP118686
Coordinates   2171488..2172294 (+) Length   268 a.a.
NCBI ID   WP_309618533.1    Uniprot ID   -
Organism   Snodgrassella communis strain B10998     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166488..2177294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYG29_RS09790 (PYG29_09795) - 2166819..2167076 (-) 258 WP_239366197.1 acyl carrier protein -
  PYG29_RS09795 (PYG29_09800) - 2167114..2167371 (-) 258 WP_100138678.1 phosphopantetheine-binding protein -
  PYG29_RS09800 (PYG29_09805) - 2167372..2168100 (-) 729 WP_309619105.1 lysophospholipid acyltransferase family protein -
  PYG29_RS09805 (PYG29_09810) - 2168142..2168879 (-) 738 WP_309618532.1 beta-ketoacyl synthase chain length factor -
  PYG29_RS09810 (PYG29_09815) pgeF 2169561..2170352 (-) 792 WP_374708340.1 peptidoglycan editing factor PgeF -
  PYG29_RS09815 (PYG29_09820) rluD 2170362..2171489 (-) 1128 WP_239424248.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PYG29_RS09820 (PYG29_09825) comL 2171488..2172294 (+) 807 WP_309618533.1 outer membrane protein assembly factor BamD Machinery gene
  PYG29_RS09825 (PYG29_09830) - 2172566..2173111 (+) 546 WP_309618534.1 isochorismatase family cysteine hydrolase -
  PYG29_RS09830 (PYG29_09835) speD 2173474..2173839 (-) 366 WP_239424405.1 adenosylmethionine decarboxylase -
  PYG29_RS09835 (PYG29_09840) - 2173839..2175692 (-) 1854 WP_239424403.1 DUF4178 domain-containing protein -
  PYG29_RS09840 (PYG29_09845) - 2175701..2176711 (-) 1011 WP_309619107.1 SPFH domain-containing protein -
  PYG29_RS09845 (PYG29_09850) - 2176775..2177173 (-) 399 WP_093092781.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31022.91 Da        Isoelectric Point: 6.6495

>NTDB_id=794369 PYG29_RS09820 WP_309618533.1 2171488..2172294(+) (comL) [Snodgrassella communis strain B10998]
MKNLFLAVALGLLLSACASTSTVDKDSQVTRDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDLAY
TYYKDDENDKALAAVEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYTTFAQLVQYFPQS
KYADDARTKMQKLLEALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMISAYANLGEQALSNDTKRV
LAQNFPDSPYLQKPWNDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=794369 PYG29_RS09820 WP_309618533.1 2171488..2172294(+) (comL) [Snodgrassella communis strain B10998]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAAGATTC
CCAAGTTACCCGGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCTCATGATGAGCTGATGCACCGTAATTATACTCATG
CTGAGAAATTATACGAAATTCTACAGGCACGTTTCCCTTATGGCTCCTATGCAGAACAGGCTCAGCTGGATCTAGCTTAT
ACTTATTATAAGGACGATGAGAACGACAAGGCACTGGCAGCTGTCGAACAGTTCCAGCGTCTGTATCCGCAACATCCAAA
TATGGATTACGCACTGTATCTGAAAGCACTGATACAGTTGAATGAAGACAAATCCTTTGTCAGCAAACTGGCTAAACAGG
ATTGGTCTGACCGTGACCCGAAAGCCAATCGCGAAGCCTATACTACCTTTGCCCAGCTGGTGCAGTATTTCCCCCAGAGC
AAATATGCCGATGATGCCCGTACTAAAATGCAGAAACTACTGGAGGCACTTGGTGGCAATGAACTATCAGTAGCTCGCTA
TTACATGAAACGCGGTGCTTGGTTGGCGGCAGTGGGACGAGCACAGACAGTGATTTCCCAATATCAAAACACCCCCAATG
TAGAAGAAGCACTGGCAATCATGATTTCAGCATATGCAAATTTGGGTGAACAGGCATTGAGCAATGACACAAAACGTGTT
CTGGCACAGAATTTTCCAGACAGCCCTTATTTACAGAAACCATGGAATGACCATAATGCCATTCCGTGGTGGCGTTACTG
GAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

64.794

99.627

0.646
  comL Neisseria gonorrhoeae MS11

64.045

99.627

0.638