Detailed information NTG0794356

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PYG29_RS04075
• Genome accession: NZ_CP118686
• Coordinates: 876675..878150 (+)
• Length: 491 a.a.
• NCBI ID: WP_309618933.1
• Uniprot ID: -
• Organism: Snodgrassella communis strain B10998
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 871675..883150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYG29_RS04065 (PYG29_04065)	parC	872783..875095 (+)	2313	WP_239423958.1	DNA topoisomerase IV subunit A	-
PYG29_RS04070 (PYG29_04070)	-	875108..876682 (+)	1575	WP_309618932.1	HAMP domain-containing sensor histidine kinase	-
PYG29_RS04075 (PYG29_04075)	pilR	876675..878150 (+)	1476	WP_309618933.1	sigma-54 dependent transcriptional regulator	Regulator
PYG29_RS04080 (PYG29_04080)	-	878150..878911 (+)	762	WP_309618934.1	class I SAM-dependent methyltransferase	-
PYG29_RS04085 (PYG29_04085)	amgK	879305..880309 (-)	1005	WP_239423954.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
PYG29_RS04090 (PYG29_04090)	-	880369..882702 (+)	2334	WP_309618935.1	LPS-assembly protein LptD	-

Sequence

Protein

• Length: 491 a.a.
• Molecular weight: 54665.49 Da
• Isoelectric Point: 5.9601

>NTDB_id=794356 PYG29_RS04075 WP_309618933.1 876675..878150(+) (pilR) [Snodgrassella communis strain B10998]
MNNQIDLKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHTFSLVLTDMRMPDGSGLEIVDYITAHNLD
IPIAVITAYGNAVQAVEALKNGAFDYLQKPITLAQLRTLVKSVLTINNTVEIEPISKQASAPKQFDKKMKNEPTSDKASE
TPVCERLLGSSPLIAEVRQLIGKLAKSNVPVYIAGESGSGKEQAARSIHELSARRDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADADRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNTLVESGQF
RQDLFYRLNVVSITMPPLRELRDDLPQLIQVLLQRILHGETMTLTVDAEKALLQYSYPGNFRELENILERAIALSKNQVI
EVDDLQIHSHQLDAQHTASSDSSSNLSSDSHASPQDFQFGHTQIQDYLDDIERHILQQALVQTRYNRTQAAKLLGISFRS
MRYRMERLGIV

Nucleotide

• Length: 1476 bp

>NTDB_id=794356 PYG29_RS04075 WP_309618933.1 876675..878150(+) (pilR) [Snodgrassella communis strain B10998]
ATGAATAATCAAATAGATTTAAAGAAGCCGGTACTGGTGATAGATGATGAAGCCGATATTCGTGATTTGATGGAATTAAC
CCTGATTAAAATGGGTTTATCTGTACAAACAGCTGCAGGTGTGGCTGAAGCTAAAAAGGCTTTACGTAACCATACTTTTT
CACTGGTGCTCACAGATATGCGTATGCCGGATGGATCCGGTCTGGAGATTGTTGATTATATTACTGCCCATAATCTGGAT
ATTCCGATTGCTGTGATTACAGCTTACGGCAATGCCGTACAGGCTGTAGAGGCACTGAAAAATGGTGCTTTCGACTATCT
GCAAAAACCAATTACCTTAGCACAACTGCGTACTCTAGTTAAGTCTGTGCTAACCATTAATAATACAGTGGAAATCGAAC
CAATCAGCAAACAGGCATCAGCACCAAAACAATTTGATAAAAAAATGAAAAATGAACCAACTTCTGACAAAGCCAGCGAA
ACACCTGTATGTGAGCGCTTACTGGGTAGTTCACCGCTAATCGCAGAAGTGCGACAACTTATTGGTAAACTGGCCAAAAG
TAATGTACCGGTATATATCGCAGGGGAATCTGGTAGTGGTAAAGAACAGGCAGCACGCAGTATTCATGAGCTATCGGCAC
GCAGAGATAAAGCGTTTGTTGCAGTAAATTGCGGAGCCATACCAGAAGCACTGATGGAGAGTGAATTTTTTGGTTATAAA
AAAGGCAGCTTTACAGGTGCTGATGCCGATCGGGCAGGTTTTTTCCAGCATGCGGATGGCGGGACATTATTTCTGGATGA
AGTAGCAGATTTGCCATTATCAATGCAGGTTAAACTGTTGCGCGCCATTCAGGAACGTGCTGTACGCCGGATCGGTGAGA
TGGAAGAAAAACAGGTTGATGTGCGTATTATCTGTGCAACACATAAAGATCTGAATACTTTGGTTGAGTCGGGACAATTT
CGTCAGGATTTGTTTTATCGTCTAAATGTGGTATCCATTACCATGCCACCTTTGCGTGAATTACGTGATGATTTGCCGCA
ATTGATTCAGGTTTTGTTACAACGAATTTTGCACGGTGAAACCATGACCTTAACTGTCGATGCTGAAAAAGCCTTATTGC
AATACAGCTACCCGGGCAATTTCCGGGAATTGGAAAATATTCTGGAACGAGCGATTGCTTTATCCAAAAATCAGGTTATA
GAGGTTGATGATCTACAGATCCATAGTCACCAACTGGATGCACAGCATACTGCATCTTCCGACAGTAGCAGCAACTTATC
GTCAGATAGTCACGCATCGCCTCAGGATTTCCAGTTTGGACACACTCAGATACAGGATTATCTGGACGATATAGAACGAC
ACATCTTGCAGCAGGCATTGGTACAAACCCGCTACAACCGCACACAGGCTGCCAAATTACTGGGTATCAGCTTTCGATCA
ATGCGTTACCGGATGGAACGATTGGGTATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (448-487)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.719	99.185	0.503
pilR	Acinetobacter baumannii strain A118	42.975	98.574	0.424