Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PWA60_RS18740 Genome accession   NZ_CP118677
Coordinates   3939743..3941956 (-) Length   737 a.a.
NCBI ID   WP_192440712.1    Uniprot ID   A0AAJ5S161
Organism   Pseudomonas juntendi strain GDW21C697WI     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3934743..3946956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWA60_RS18705 (PWA60_18705) murB 3935028..3936047 (-) 1020 WP_192440710.1 UDP-N-acetylmuramate dehydrogenase -
  PWA60_RS18710 (PWA60_18710) - 3936044..3936508 (-) 465 WP_054905783.1 low molecular weight protein-tyrosine-phosphatase -
  PWA60_RS18715 (PWA60_18715) kdsB 3936508..3937272 (-) 765 WP_054905782.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PWA60_RS18720 (PWA60_18720) - 3937269..3937454 (-) 186 WP_003247142.1 Trm112 family protein -
  PWA60_RS18725 (PWA60_18725) lpxK 3937498..3938499 (-) 1002 WP_054905781.1 tetraacyldisaccharide 4'-kinase -
  PWA60_RS18730 (PWA60_18730) - 3938499..3938933 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  PWA60_RS18735 (PWA60_18735) exbB 3938930..3939565 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PWA60_RS18740 (PWA60_18740) comA 3939743..3941956 (-) 2214 WP_192440712.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PWA60_RS18745 (PWA60_18745) - 3942099..3942611 (+) 513 Protein_3674 DUF2062 domain-containing protein -
  PWA60_RS18750 (PWA60_18750) - 3942615..3943394 (-) 780 WP_009681883.1 ABC transporter permease -
  PWA60_RS18755 (PWA60_18755) - 3943391..3944323 (-) 933 WP_009681882.1 ABC transporter ATP-binding protein -
  PWA60_RS18760 (PWA60_18760) - 3944470..3945093 (-) 624 WP_054906176.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79411.12 Da        Isoelectric Point: 9.9256

>NTDB_id=794296 PWA60_RS18740 WP_192440712.1 3939743..3941956(-) (comA) [Pseudomonas juntendi strain GDW21C697WI]
MRTGMLALALGLLCLGFLPVLPPDGWLWVLAACAGVCLFTRGWPLGCFLLGLCWASWSAQQALDDRLAAALDGRTLWLEG
RVVGLPARTAHGVRFELEAARSRRAELPQRLQVSWFDGPPVRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPASYGWRDTLRQRLLAVDANGRQGALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACALAMGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVVVLLVEPL
AALLPGFWLSFGAVATLVFCFSARLGAWRPWQAWTRAQWVIAIGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGAGEALLWLAGGLLDVLFRVLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGDSDLGERVVLPTLRKLGVSHLDVMLISHAHADHAGGAG
AIQRGLPVERVIGGEALDDVQLQPCASGEQWEWDGVGFSLWRWADGRSSNDRSCVLLVEAQGERLLLAGDMEVGAERAWL
AATDAPRIDWLQSPHHGSRSSSSEGFMRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVVHDTAVQGALRLVLGGWG
EVEGMRGQRRFWRARVE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=794296 PWA60_RS18740 WP_192440712.1 3939743..3941956(-) (comA) [Pseudomonas juntendi strain GDW21C697WI]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGCTGTGCCTGGGCTTTCTTCCTGTATTGCCACCGGACGGGTGGTT
GTGGGTGCTGGCGGCTTGCGCTGGCGTCTGCCTGTTCACCCGCGGGTGGCCATTGGGCTGTTTTCTGTTGGGGCTGTGCT
GGGCCAGCTGGTCTGCCCAGCAGGCCCTGGATGACCGGCTGGCGGCCGCTTTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCGGCACGCACGGCGCACGGTGTGCGTTTCGAGCTGGAGGCCGCCCGTTCGCGCCGTGCCGAATT
GCCACAACGCCTGCAAGTCAGCTGGTTCGACGGGCCGCCGGTACGGGCCGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCCGCCGGGTTGTTGAACCCGCATGGGCCGGACCGTGAAGCGCAGTTGCTGGCCCGGCGGGTCGGCGCTACCGGT
ACGGTGAAGGCGGGGCAGCTGCTGGCGCCGGCCAGCTATGGGTGGCGGGACACGCTGCGCCAGCGCTTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGGCGCGCTGGTGGCCCTGGTGCTCGGCGACGGGGCCGGCCTGGCGCGGGAAGATTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACTTGTTGGTCATTTCCGGCCAGCACATTGGCCTGGTTGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGTTGGCCCGCTGGGGGCTGTGGCCCGCACGGCTGCCGTGGCTGCCCTCGGCGTGCGCGCTGGCCATGGGTGC
GGCACTGGCCTACGGCTGGCTGGCCGGCGCGGGGGTGCCGGTACAGCGTGCCTGTCTGATGCTGGCCGTGGTGTTGCTCT
GGCGGCTGCGTTTTCGGCACCTGGGGGCGTTCCTGCCACTGTTGCTGGCGCTGGTGGTCGTGTTGCTGGTCGAGCCGCTG
GCGGCGCTGCTTCCGGGCTTCTGGCTGTCGTTCGGCGCCGTGGCCACGCTGGTGTTTTGCTTCAGTGCCCGCCTGGGGGC
ATGGCGGCCATGGCAGGCCTGGACGCGGGCGCAGTGGGTGATTGCCATCGGTTTGTTGCCGGTGCTGCTGGCCGTGGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTGGTGGCGGTGCCATGGGTGAGCCTGGCGGTACTGCCGTTGGCCTTG
CTGGGTACCTTGCTGTTGCCGTTGGGTGGGGCTGGGGAGGCCTTGTTGTGGCTGGCAGGTGGCTTGCTGGACGTGCTGTT
TCGGGTGTTGGCGCTGGTTGCGCAGCAACGCCCGGCATGGGTGCCGCCAGCCCTGCCGCTATGGGCCTGGCTGCTGGTCT
GCCTGGGGGCTTTGCTGGTGCTGCTGCCCCGTGGCGTGCCGCTGAGAGGGTTGGGCGGGGTGATGCTGTTGGCCCTTTGG
GTGCCGCGCGAGCCGGTGCCTTTCGGGCAGGTGGAGGTCTGGCAACTGGACGTTGGCCAAGGCTTGGCGGTGCTGTTGCG
CACCCGGCATCACAACCTGCTGTATGACGCCGGGCCGGCGAGGGGCGACAGCGACCTGGGGGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGTTGGGGGTGAGTCACCTGGACGTGATGCTGATCAGCCATGCCCACGCCGATCATGCCGGCGGTGCTGGG
GCGATACAGCGGGGTTTGCCGGTCGAGCGGGTTATCGGTGGGGAAGCGCTGGATGATGTTCAGTTGCAACCCTGTGCCAG
TGGCGAGCAATGGGAATGGGATGGCGTGGGTTTTTCGCTGTGGCGCTGGGCGGATGGGCGCAGCAGTAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCCGGCGACATGGAGGTAGGGGCGGAGCGTGCCTGGCTG
GCGGCGACCGACGCGCCACGCATTGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCCTCCAGCGAGGGGTTCAT
GCGTGCCACGGCGCCGCGTGGGGTGCTGATATCGCGGGGGCGCAATAATAGCTTTGGACACCCGCATGCGCAGGTGGTGG
AGCGGTACCGGCGGCATGGGGTGGTGGTGCATGACACGGCGGTGCAGGGGGCTTTGCGGTTGGTGCTGGGTGGGTGGGGG
GAGGTTGAGGGGATGCGGGGACAGCGGCGGTTCTGGCGGGCTCGGGTGGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.783

98.1

0.577
  comA Ralstonia pseudosolanacearum GMI1000

35.173

100

0.372