Detailed information NTG0794287

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWA60_RS03155
• Genome accession: NZ_CP118677
• Coordinates: 687355..688221 (-)
• Length: 288 a.a.
• NCBI ID: WP_033690441.1
• Uniprot ID: A0AAJ5S307
• Organism: Pseudomonas juntendi strain GDW21C697WI
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 682355..693221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWA60_RS03125 (PWA60_03125)	-	683351..684646 (-)	1296	WP_009683004.1	NAD(P)/FAD-dependent oxidoreductase	-
PWA60_RS03130 (PWA60_03130)	-	684731..684904 (-)	174	WP_033744188.1	DUF3094 family protein	-
PWA60_RS03135 (PWA60_03135)	-	685038..685667 (-)	630	WP_009683003.1	DUF1780 domain-containing protein	-
PWA60_RS03140 (PWA60_03140)	-	685800..686483 (+)	684	WP_009683002.1	energy-coupling factor ABC transporter permease	-
PWA60_RS03145 (PWA60_03145)	yacG	686535..686735 (-)	201	WP_009683001.1	DNA gyrase inhibitor YacG	-
PWA60_RS03150 (PWA60_03150)	coaE	686732..687355 (-)	624	WP_192441614.1	dephospho-CoA kinase	-
PWA60_RS03155 (PWA60_03155)	pilD	687355..688221 (-)	867	WP_033690441.1	A24 family peptidase	Machinery gene
PWA60_RS03160 (PWA60_03160)	-	688224..689432 (-)	1209	WP_192441616.1	type II secretion system F family protein	-
PWA60_RS03165 (PWA60_03165)	-	689648..690058 (+)	411	WP_029884908.1	pilin	-
PWA60_RS03175 (PWA60_03175)	-	690367..691671 (+)	1305	WP_192441618.1	integrase arm-type DNA-binding domain-containing protein	-
PWA60_RS03180 (PWA60_03180)	-	691934..692713 (+)	780	WP_275000111.1	hypothetical protein	-
PWA60_RS03185 (PWA60_03185)	-	692783..693043 (+)	261	WP_192441622.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31740.91 Da
• Isoelectric Point: 8.0860

>NTDB_id=794287 PWA60_RS03155 WP_033690441.1 687355..688221(-) (pilD) [Pseudomonas juntendi strain GDW21C697WI]
MTLWTLLAEQPAYFYTLASVLGLLVGSFLNVLVYRLPIMLERQWQREAQQVLGLPTTQHPRFDLCLPASRCPQCAHPIRP
WQNIPVLSYLALRGRCSACKARISPRYPLVEVASALLSLLVAWRFGASAEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFAVYVPLGSAVWGAVAGYLCLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLHLHRHALGAAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=794287 PWA60_RS03155 WP_033690441.1 687355..688221(-) (pilD) [Pseudomonas juntendi strain GDW21C697WI]
ATGACTTTATGGACCTTGCTGGCTGAACAGCCGGCGTACTTCTACACCCTGGCGAGCGTGCTCGGCCTGCTGGTAGGCAG
CTTTCTGAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAAGCGCAGCAGGTTCTGGGGC
TGCCGACTACGCAGCACCCGCGCTTCGACCTGTGCCTGCCCGCTTCGCGCTGCCCGCAGTGCGCACACCCGATTCGCCCG
TGGCAGAACATTCCAGTGCTCAGCTACCTGGCCTTGCGTGGGCGCTGCTCTGCCTGCAAGGCCCGCATCAGCCCGCGTTA
CCCACTGGTGGAAGTGGCCAGTGCGCTGCTGTCGCTGCTGGTGGCCTGGCGTTTTGGTGCGTCAGCCGAGGCATTGCTGG
CATTGCCCTTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGATCACCAGCTGTTGCCGGACGTACTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGCCGTGTATGTGCCGCTGGGCAGTGCGGTATGGGGGGCGGTGGC
GGGTTACCTCTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCA
AGCTGATGGCGCTGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGTTGGCCTGTGCTTGTTGCATTTGCACCGGCACGCACTAGGCGCGGCGATGCCGTTTGGCCCTTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTGGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.878	96.528	0.51
pilD	Acinetobacter baumannii D1279779	52.03	94.097	0.49
pilD	Acinetobacter nosocomialis M2	51.292	94.097	0.483
pilD	Vibrio campbellii strain DS40M4	49.638	95.833	0.476
pilD	Neisseria gonorrhoeae MS11	50.189	92.014	0.462