Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   PSR64_RS04175 Genome accession   NZ_CP118670
Coordinates   838258..839520 (+) Length   420 a.a.
NCBI ID   WP_061812048.1    Uniprot ID   A0A1Y0VW88
Organism   Pediococcus pentosaceus strain SM2D17     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 833258..844520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR64_RS04150 (PSR64_04145) tsf 834114..834992 (+) 879 WP_002833606.1 translation elongation factor Ts -
  PSR64_RS04155 (PSR64_04150) pyrH 835146..835871 (+) 726 WP_002833607.1 UMP kinase -
  PSR64_RS04160 (PSR64_04155) frr 835871..836431 (+) 561 WP_060743698.1 ribosome recycling factor -
  PSR64_RS04165 (PSR64_04160) - 836689..837438 (+) 750 WP_094104512.1 isoprenyl transferase -
  PSR64_RS04170 (PSR64_04165) - 837449..838234 (+) 786 WP_041527001.1 phosphatidate cytidylyltransferase -
  PSR64_RS04175 (PSR64_04170) eeP 838258..839520 (+) 1263 WP_061812048.1 RIP metalloprotease RseP Regulator
  PSR64_RS04180 (PSR64_04175) - 839548..841263 (+) 1716 WP_115154772.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46346.98 Da        Isoelectric Point: 9.6829

>NTDB_id=794264 PSR64_RS04175 WP_061812048.1 838258..839520(+) (eeP) [Pediococcus pentosaceus strain SM2D17]
MITTIITFIVVFLILVVVHEYGHFVAAKKSGILVREFSIGMGPKIVDLKRNGTTYTLRILPIGGYVRMAGLDEQEDELKA
GQHVTLTTDNTGQVTIINTSSKVQNLMGIPVDVTSFDLQDKLFIEGYENGNEDEVKHFEIDHDASIVESDGTEVRIAPRD
VQFQSAKIWQRLITNFAGPFNNFVLAIVVFAIMGVMQGAVPANTNQVQVVENGVAQKAGIKNNDRIVRVEGQKTDNWSQL
SKAVSARPNQKTTLEVLRQKQIKKITLTPKLASNGSKKVGMIGVQSSMTTNLGKRVLYGFTGTWQMAKSLFTALGQMLHG
FSLNDLGGPVAIYATTSQATHQGFMSVLYVLGFLSLNLGIVNLLPIPALDGGKILLNLVEMIRRKPLKVETENVITLIGF
GFLMILMLLVTWNDIQRYFF

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=794264 PSR64_RS04175 WP_061812048.1 838258..839520(+) (eeP) [Pediococcus pentosaceus strain SM2D17]
ATGATAACTACGATTATTACCTTTATTGTTGTATTTTTAATTTTAGTTGTTGTCCATGAGTATGGGCATTTTGTTGCGGC
TAAAAAGTCCGGTATTTTAGTTCGTGAATTTTCAATTGGGATGGGTCCTAAAATTGTTGATTTGAAGCGTAATGGAACTA
CGTATACTTTACGGATTCTTCCCATTGGTGGTTATGTTCGAATGGCGGGACTCGATGAACAAGAAGATGAATTGAAAGCG
GGACAACATGTTACATTAACCACGGATAATACTGGACAAGTGACGATTATTAATACTTCTAGTAAAGTTCAAAATTTGAT
GGGCATTCCAGTTGATGTAACCAGTTTTGACTTACAAGATAAATTATTCATTGAAGGTTATGAAAATGGTAACGAAGACG
AAGTTAAACATTTTGAAATTGATCATGATGCATCGATAGTCGAATCCGACGGGACAGAAGTTCGAATTGCACCGCGTGAT
GTTCAATTTCAATCTGCTAAGATTTGGCAGCGACTAATTACTAATTTTGCTGGACCATTTAATAATTTTGTTTTGGCCAT
CGTTGTTTTTGCGATAATGGGAGTTATGCAGGGAGCAGTTCCGGCTAATACTAACCAAGTACAAGTCGTTGAAAATGGTG
TTGCTCAAAAAGCAGGAATTAAAAATAATGATCGTATTGTTAGAGTTGAAGGACAAAAAACAGATAATTGGAGTCAATTA
TCTAAGGCAGTTTCAGCTCGTCCAAATCAAAAAACGACTTTAGAAGTATTACGTCAAAAGCAAATAAAGAAAATCACATT
AACACCTAAGTTAGCAAGTAATGGTAGTAAAAAAGTGGGTATGATTGGTGTTCAATCATCCATGACAACTAATTTAGGTA
AGCGAGTTTTATATGGTTTCACTGGAACTTGGCAAATGGCTAAGAGTTTGTTTACCGCTTTAGGACAGATGCTACATGGC
TTTAGCTTGAATGATTTAGGCGGTCCTGTTGCAATTTATGCCACGACCTCTCAAGCTACCCATCAAGGCTTCATGTCAGT
GCTGTATGTGCTAGGTTTTCTATCCCTAAACTTGGGGATTGTTAACTTATTACCAATTCCAGCTTTGGATGGAGGAAAAA
TTCTCCTAAATCTCGTTGAAATGATTCGAAGAAAACCTTTAAAAGTTGAAACCGAAAATGTGATTACGCTAATTGGCTTT
GGATTTTTAATGATATTAATGCTGTTAGTTACTTGGAATGATATTCAAAGATACTTTTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(208-258)

Peptidase family M50 (Peptidase_M50)

(7-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0VW88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

47.877

100

0.483
  eeP Streptococcus thermophilus LMD-9

47.877

100

0.483