Detailed information NTG0793943

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PVV54_RS22735
• Genome accession: NZ_CP118607
• Coordinates: 5087556..5088422 (+)
• Length: 288 a.a.
• NCBI ID: WP_274907388.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PSKL.D1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5082556..5093422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVV54_RS22710 (PVV54_22710)	-	5083533..5083751 (+)	219	WP_274907384.1	hypothetical protein	-
PVV54_RS22715 (PVV54_22715)	-	5084744..5085301 (+)	558	WP_274907385.1	hypothetical protein	-
PVV54_RS22725 (PVV54_22725)	-	5085728..5086141 (-)	414	WP_274907386.1	pilin	-
PVV54_RS22730 (PVV54_22730)	-	5086346..5087554 (+)	1209	WP_274907387.1	type II secretion system F family protein	-
PVV54_RS22735 (PVV54_22735)	pilD	5087556..5088422 (+)	867	WP_274907388.1	A24 family peptidase	Machinery gene
PVV54_RS22740 (PVV54_22740)	coaE	5088422..5089045 (+)	624	WP_274907389.1	dephospho-CoA kinase	-
PVV54_RS22745 (PVV54_22745)	yacG	5089042..5089242 (+)	201	WP_274907390.1	DNA gyrase inhibitor YacG	-
PVV54_RS22750 (PVV54_22750)	-	5089306..5089989 (-)	684	WP_274907391.1	energy-coupling factor ABC transporter permease	-
PVV54_RS22755 (PVV54_22755)	-	5090081..5090710 (+)	630	WP_274907392.1	DUF1780 domain-containing protein	-
PVV54_RS22760 (PVV54_22760)	-	5090843..5091016 (+)	174	WP_013970765.1	DUF3094 family protein	-
PVV54_RS22765 (PVV54_22765)	-	5091101..5092396 (+)	1296	WP_274907393.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31617.68 Da
• Isoelectric Point: 7.5882

>NTDB_id=793943 PVV54_RS22735 WP_274907388.1 5087556..5088422(+) (pilD) [Pseudomonas sp. PSKL.D1]
MTLWTFLAEQPAYFLTLATVLGLLVGSFLNVVVYRLPIMLERQWQREAQEVLGLPLAEHARFDLCLPASRCPHCAHRIRA
WENIPVVSYLALRGRCSACKHSISVRYPLVEVACALLSLVVAWHFGASAQALLALPLTWCLLALSLIDADHGVLPDVLVL
PTLWLGLIANAFATFVPLSDALWGAVAGYLSLWSVYWLFKIITGKEGMGYGDFKLLALIGAWGGWQVLPLTLMLSSVVGA
VIGLCLLRLRRLSVGTAIPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=793943 PVV54_RS22735 WP_274907388.1 5087556..5088422(+) (pilD) [Pseudomonas sp. PSKL.D1]
ATGACGTTATGGACTTTTCTGGCCGAGCAGCCGGCGTATTTCCTCACCTTGGCAACCGTGCTGGGCCTGCTGGTGGGCAG
CTTTTTGAATGTGGTGGTGTATCGCCTGCCGATCATGCTGGAGCGCCAGTGGCAACGTGAGGCGCAAGAGGTGCTGGGCC
TGCCGCTGGCCGAACATGCACGCTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCGCACTGCGCGCATCGCATCCGTGCG
TGGGAAAACATCCCGGTGGTGAGTTACCTGGCATTAAGGGGGCGCTGTTCGGCCTGCAAGCACTCCATCAGTGTGAGATA
CCCGCTGGTGGAAGTGGCCTGCGCGTTGTTGTCGCTGGTGGTCGCCTGGCATTTTGGTGCGTCAGCCCAGGCGTTGCTGG
CGTTACCACTCACCTGGTGCCTGTTGGCGTTGAGCCTGATTGATGCCGACCATGGCGTGCTGCCGGATGTACTGGTATTG
CCAACCCTGTGGCTGGGCCTGATCGCCAACGCCTTCGCCACCTTTGTGCCATTGAGCGATGCGCTTTGGGGGGCAGTGGC
GGGCTACCTCAGCCTGTGGAGCGTTTACTGGCTGTTCAAGATCATCACCGGCAAGGAAGGCATGGGCTACGGCGATTTCA
AGCTGCTGGCATTGATCGGCGCCTGGGGCGGCTGGCAGGTGTTGCCGTTGACCTTGATGCTGTCGTCGGTGGTGGGTGCG
GTTATCGGGCTGTGTTTGCTGCGCCTGCGCAGGCTATCGGTCGGCACGGCGATACCTTTTGGCCCTTACTTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.396	96.528	0.535
pilD	Acinetobacter baumannii D1279779	51.786	97.222	0.503
pilD	Acinetobacter nosocomialis M2	51.071	97.222	0.497
pilD	Vibrio campbellii strain DS40M4	51.264	96.181	0.493
pilD	Neisseria gonorrhoeae MS11	49.442	93.403	0.462