Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PVV54_RS18675 Genome accession   NZ_CP118607
Coordinates   4230715..4231350 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas sp. PSKL.D1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4225715..4236350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVV54_RS18645 (PVV54_18645) murB 4226804..4227823 (-) 1020 WP_274906661.1 UDP-N-acetylmuramate dehydrogenase -
  PVV54_RS18650 (PVV54_18650) - 4227820..4228284 (-) 465 WP_274906662.1 low molecular weight protein-tyrosine-phosphatase -
  PVV54_RS18655 (PVV54_18655) kdsB 4228284..4229048 (-) 765 WP_274906663.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PVV54_RS18660 (PVV54_18660) - 4229045..4229230 (-) 186 WP_003247142.1 Trm112 family protein -
  PVV54_RS18665 (PVV54_18665) lpxK 4229274..4230284 (-) 1011 WP_274906664.1 tetraacyldisaccharide 4'-kinase -
  PVV54_RS18670 (PVV54_18670) - 4230284..4230718 (-) 435 WP_274906665.1 biopolymer transporter ExbD -
  PVV54_RS18675 (PVV54_18675) exbB 4230715..4231350 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PVV54_RS18680 (PVV54_18680) comA 4231427..4233634 (-) 2208 WP_274906666.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PVV54_RS18685 (PVV54_18685) - 4233777..4234403 (+) 627 WP_274906667.1 DUF2062 domain-containing protein -
  PVV54_RS18690 (PVV54_18690) - 4234287..4235066 (-) 780 WP_274906668.1 ABC transporter permease -
  PVV54_RS18695 (PVV54_18695) - 4235063..4235995 (-) 933 WP_274906669.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=793936 PVV54_RS18675 WP_016391244.1 4230715..4231350(-) (exbB) [Pseudomonas sp. PSKL.D1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=793936 PVV54_RS18675 WP_016391244.1 4230715..4231350(-) (exbB) [Pseudomonas sp. PSKL.D1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCGCCGCACCTGCTGGGCCAGGTCTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCCGGCCTTGCCAAC
TCGCGTCATGGCCGCGAAATCATGAAAGAGTGCATCGAAGAAGCCGCCTCGCGCGTGATCCACGAGCTGGAGCGCTATAT
CAGCACCCTGGGCACCATTGCCGCCATGGCCCCGCTACTCGGCCTGCTGGGTACGGTGTTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGGTCGCAAATGACCGCCAACGCAGCCGTGTTGGCCGGCGGTATTTCCAAGGCCCTGGTGACCACGGCG
GCCGGCCTGATGGTTGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829