Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PVV54_RS18680 Genome accession   NZ_CP118607
Coordinates   4231427..4233634 (-) Length   735 a.a.
NCBI ID   WP_274906666.1    Uniprot ID   -
Organism   Pseudomonas sp. PSKL.D1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4226427..4238634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVV54_RS18645 (PVV54_18645) murB 4226804..4227823 (-) 1020 WP_274906661.1 UDP-N-acetylmuramate dehydrogenase -
  PVV54_RS18650 (PVV54_18650) - 4227820..4228284 (-) 465 WP_274906662.1 low molecular weight protein-tyrosine-phosphatase -
  PVV54_RS18655 (PVV54_18655) kdsB 4228284..4229048 (-) 765 WP_274906663.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PVV54_RS18660 (PVV54_18660) - 4229045..4229230 (-) 186 WP_003247142.1 Trm112 family protein -
  PVV54_RS18665 (PVV54_18665) lpxK 4229274..4230284 (-) 1011 WP_274906664.1 tetraacyldisaccharide 4'-kinase -
  PVV54_RS18670 (PVV54_18670) - 4230284..4230718 (-) 435 WP_274906665.1 biopolymer transporter ExbD -
  PVV54_RS18675 (PVV54_18675) exbB 4230715..4231350 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PVV54_RS18680 (PVV54_18680) comA 4231427..4233634 (-) 2208 WP_274906666.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PVV54_RS18685 (PVV54_18685) - 4233777..4234403 (+) 627 WP_274906667.1 DUF2062 domain-containing protein -
  PVV54_RS18690 (PVV54_18690) - 4234287..4235066 (-) 780 WP_274906668.1 ABC transporter permease -
  PVV54_RS18695 (PVV54_18695) - 4235063..4235995 (-) 933 WP_274906669.1 ABC transporter ATP-binding protein -
  PVV54_RS18700 (PVV54_18700) - 4236130..4236753 (-) 624 WP_274906670.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 78391.14 Da        Isoelectric Point: 10.6050

>NTDB_id=793937 PVV54_RS18680 WP_274906666.1 4231427..4233634(-) (comA) [Pseudomonas sp. PSKL.D1]
MRTGMLALALGLLSLGLLPSLPSVGWLTLLLAGGLLCLFTRLRLIGLFVLGLCWACWSAQQALSDRLSAELDGRTLWLEG
RVAGLPTQTGQGMRFELEGPSSRRAALPQRLLLNWFDGPPVRTGERWSLAVTLHRPAGLLNPHGPDREAQLLARRTGATG
TVKAGQVLDAASPGVRDALRQRLSQVDAHGREAALAALVLGDGAGLPREDWQVLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPRGLPWLPCACALAMSAALAYGWLAGGGVPVQRACLMLAVVLAWRLRFRHVGAVVPLLLALNAVLIAEPL
AALLPGFWLSFAAVAILLYSFSARLGGWRPWQVWTRAQWVIAVGLLPVLLATGLPVSLSAPFANLLAVPWVSLAVLPLAL
LGTVLLPLAPVGDSLLWVAGGLLDVLFRVLAVLAQWQPAWVPPVLPLGAWLLVCLGALLLLLPAGVPLRWLGGVMLLALW
VPKAPVGQGQVEVWHLDVGQGLAVLLRTRHHAMLYDAGPARGGNDLGERVVLPTLRKLGVGALDVLLISHAHADHAGGAE
AIRQGLPVRQVLAGEPQALPLAEPCLSGQRWEWDGVSFSLWQWPAGQGSNDRSCVLMVEARGERLLLAGDMEAGAERAWL
AANAGLTADWLQAPHHGSRSSSTEAFIGALAPRGVMISRGRNNGFGHPHAQVIERYRRHGLMVHDTAQQGALRLVLGAQG
GVEGMRGKARFWRER

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=793937 PVV54_RS18680 WP_274906666.1 4231427..4233634(-) (comA) [Pseudomonas sp. PSKL.D1]
ATGCGCACAGGGATGCTTGCGCTGGCACTCGGGCTGTTGAGCCTGGGGCTTTTGCCGTCGTTGCCATCGGTCGGATGGCT
GACTTTGCTGCTGGCTGGCGGGCTGCTTTGCCTGTTCACGCGGCTGCGGCTGATCGGTTTGTTCGTATTGGGCCTTTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGAGCGACCGCTTGTCAGCCGAGCTGGATGGCCGAACGCTGTGGCTGGAGGGG
CGGGTGGCAGGCCTGCCGACGCAAACGGGGCAGGGTATGCGTTTTGAGCTGGAAGGCCCGAGTTCGCGCCGTGCCGCACT
GCCGCAACGCCTGCTGTTGAACTGGTTTGACGGCCCGCCTGTGCGCACGGGCGAGCGTTGGAGCCTGGCCGTGACGCTGC
ATCGCCCGGCAGGTTTGCTTAACCCGCATGGGCCGGACCGTGAGGCCCAATTGCTGGCTCGCCGCACAGGCGCAACCGGC
ACGGTGAAGGCCGGGCAGGTGCTGGACGCCGCGTCACCGGGCGTACGCGATGCCCTGCGCCAGCGCCTGTCGCAGGTTGA
TGCCCATGGGCGTGAGGCGGCGCTCGCGGCGCTGGTGCTGGGGGACGGTGCGGGGTTACCACGGGAGGACTGGCAAGTGC
TGCAGGCCACCGGCACGGTGCATTTGCTGGTGATTTCCGGGCAGCACATCGGCCTTGTCGCCGGCCTGCTTTATGGCCTG
GTTGCCGGTTTGGCGCGTTGGGGGCTGTGGCCGCGTGGCTTGCCGTGGCTGCCTTGTGCCTGCGCTTTGGCGATGAGTGC
GGCATTGGCTTACGGTTGGCTGGCCGGTGGCGGTGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCCGTGGTACTGGCCT
GGCGATTGCGGTTTCGGCATGTGGGGGCGGTTGTCCCGTTGTTGCTCGCGCTCAATGCCGTATTGATCGCCGAACCGCTG
GCTGCGCTGCTGCCGGGGTTTTGGCTGTCGTTCGCGGCAGTGGCGATTCTGCTCTACAGCTTCAGTGCGCGGCTGGGTGG
CTGGCGGCCCTGGCAGGTGTGGACGCGTGCCCAGTGGGTAATCGCGGTGGGCCTGCTGCCCGTGCTGCTGGCGACCGGGT
TGCCGGTTAGCCTGAGTGCTCCCTTTGCGAACCTGTTGGCGGTGCCGTGGGTCAGCCTGGCGGTGTTGCCTTTGGCATTG
CTGGGGACGGTGTTGTTGCCGCTGGCGCCGGTTGGCGACAGCCTGCTGTGGGTGGCGGGTGGCCTGCTGGATGTGCTGTT
TCGGGTGCTGGCCGTCTTGGCGCAATGGCAGCCTGCCTGGGTGCCGCCGGTTCTGCCGTTGGGCGCCTGGCTGCTGGTGT
GTCTCGGCGCGCTGTTGCTGTTGTTGCCTGCCGGCGTACCGTTACGCTGGCTGGGTGGGGTCATGCTGCTGGCCTTGTGG
GTGCCCAAAGCGCCGGTGGGGCAAGGGCAGGTGGAGGTCTGGCACCTGGATGTCGGCCAAGGGCTGGCGGTCCTGCTGCG
TACGCGCCATCACGCCATGCTCTACGACGCAGGCCCCGCACGCGGTGGTAACGATCTGGGGGAGCGGGTGGTGCTGCCGA
CCCTGCGCAAACTTGGCGTAGGTGCGCTGGATGTGCTGTTGATCAGTCATGCCCACGCTGATCATGCGGGTGGTGCCGAG
GCTATCCGCCAAGGGTTGCCTGTGCGTCAGGTGCTGGCGGGGGAGCCGCAGGCGCTGCCGTTGGCCGAGCCTTGCCTGAG
TGGGCAACGTTGGGAATGGGACGGGGTGTCTTTTTCGCTGTGGCAGTGGCCAGCGGGGCAGGGCAGCAATGACCGCTCCT
GCGTGCTGATGGTCGAGGCCCGGGGCGAGCGACTGTTGCTGGCGGGCGACATGGAAGCGGGTGCAGAGCGTGCCTGGCTG
GCTGCCAACGCGGGGTTGACGGCCGACTGGTTGCAGGCCCCACACCATGGCAGCCGCAGCTCTTCCACCGAGGCGTTCAT
CGGCGCCCTTGCCCCGCGTGGCGTGATGATCTCGCGAGGGCGCAACAACGGTTTCGGGCACCCGCATGCACAGGTTATCG
AGCGCTACCGCCGCCATGGGCTGATGGTTCACGACACGGCGCAGCAGGGGGCGTTGCGCTTGGTGCTCGGTGCCCAGGGG
GGTGTGGAAGGCATGCGCGGCAAAGCACGCTTCTGGCGCGAGCGGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-672)

Competence protein (Competence)

(198-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.472

97.959

0.573
  comA Ralstonia pseudosolanacearum GMI1000

34.949

100

0.373