Detailed information NTG0793863

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: PUN47_RS13630
• Genome accession: NZ_CP118599
• Coordinates: 2911457..2912461 (-)
• Length: 334 a.a.
• NCBI ID: WP_274888699.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 10M-VF
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2906457..2917461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUN47_RS13605 (PUN47_13605)	aroK	2907325..2907843 (-)	519	WP_004728569.1	shikimate kinase AroK	-
PUN47_RS13610 (PUN47_13610)	pilQ	2908031..2909767 (-)	1737	WP_274888693.1	type IV pilus secretin PilQ	Machinery gene
PUN47_RS13615 (PUN47_13615)	pilP	2909792..2910304 (-)	513	WP_274888694.1	pilus assembly protein PilP	Machinery gene
PUN47_RS13620 (PUN47_13620)	pilO	2910294..2910884 (-)	591	WP_222768516.1	type 4a pilus biogenesis protein PilO	Machinery gene
PUN47_RS13625 (PUN47_13625)	pilN	2910877..2911467 (-)	591	WP_274888698.1	PilN domain-containing protein	Machinery gene
PUN47_RS13630 (PUN47_13630)	pilM	2911457..2912461 (-)	1005	WP_274888699.1	type IV pilus assembly protein PilM	Machinery gene
PUN47_RS13635 (PUN47_13635)	-	2912604..2915084 (+)	2481	WP_032081685.1	penicillin-binding protein 1A	-
PUN47_RS13640 (PUN47_13640)	oxyR	2915146..2916042 (-)	897	WP_020329438.1	DNA-binding transcriptional regulator OxyR	-
PUN47_RS13645 (PUN47_13645)	-	2916186..2916920 (+)	735	WP_020329437.1	glutathione peroxidase	-
PUN47_RS13650 (PUN47_13650)	-	2917049..2917312 (+)	264	WP_020429299.1	DUF3624 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36807.08 Da
• Isoelectric Point: 6.6959

>NTDB_id=793863 PUN47_RS13630 WP_274888699.1 2911457..2912461(-) (pilM) [Vibrio fluvialis strain 10M-VF]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSEDIFADNHTLNYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSELDASEQEFAVYQAFSHQSPLPIEELSLDFVATGEKTLGRSSSLTYQVYATRREVIDNRLSAVSKAGFEP
LLFDMQIHGLLNIWQWVSRAQQRTDWMLVDIGFSQTSLCIDFADKAPFYKDIPLGTRQLFAATSGGNADLTSPQAHFIQD
LVERLARQIQLFLSLQGHQPLAGIWLSGGGAATEGLAQAISERLALPCELFNPLAEFTCRASLRRQPQADLQRFSTAAGL
ALRGLNWLENGHAA

Nucleotide

• Length: 1005 bp

>NTDB_id=793863 PUN47_RS13630 WP_274888699.1 2911457..2912461(-) (pilM) [Vibrio fluvialis strain 10M-VF]
ATGGGTAAATCATTAGTTACAGGTGTCGATATTGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAAGGCGAATC
GTATTCGCTGGTCGGTTACCAAGAGATAGTCGTATCCGAGGATATTTTCGCTGATAACCACACGCTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTACCGCTATTTAGTCGTAAAGTGGCGCTGGCTGTACCGGACAACGCA
GTAATAAGTAAGGTATTACAGATAGATAGCGAACTGGATGCCAGCGAACAAGAGTTCGCGGTCTATCAGGCTTTTTCCCA
TCAATCGCCGCTACCCATCGAAGAGTTGAGCCTGGATTTCGTTGCTACCGGAGAAAAAACACTGGGGCGCAGCAGTTCGT
TGACGTATCAGGTCTATGCAACCCGACGTGAAGTGATCGACAACCGTTTGTCTGCGGTGAGCAAAGCGGGTTTTGAGCCG
CTGCTGTTTGATATGCAGATTCACGGCTTACTCAATATCTGGCAATGGGTCAGTCGTGCTCAGCAACGCACCGATTGGAT
GCTGGTCGATATCGGGTTCAGCCAAACCTCATTGTGCATCGACTTTGCCGACAAAGCGCCGTTTTACAAAGACATTCCGT
TGGGAACCCGCCAACTGTTTGCGGCGACCTCCGGTGGTAACGCTGACCTTACCAGCCCGCAAGCACACTTCATTCAGGAT
TTGGTTGAGCGTCTGGCGCGCCAGATCCAGCTGTTTCTTTCTCTGCAAGGTCATCAACCGCTGGCCGGTATCTGGCTATC
CGGTGGCGGCGCGGCAACGGAAGGTTTGGCGCAGGCGATTAGCGAACGTCTGGCTCTGCCTTGCGAGCTGTTTAACCCTC
TGGCGGAGTTTACTTGCCGCGCATCGTTACGCCGCCAGCCTCAGGCTGATCTGCAGCGTTTCAGTACTGCGGCCGGCTTG
GCGCTGCGCGGCCTGAATTGGCTGGAGAACGGCCATGCTGCATAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-219)

• Type IV pilus assembly protein PilM; (PilM_2) (237-324)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	65.68	100	0.665
pilM	Vibrio campbellii strain DS40M4	48.696	100	0.503