Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PUN47_RS04365 Genome accession   NZ_CP118599
Coordinates   942183..943544 (+) Length   453 a.a.
NCBI ID   WP_172560567.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 10M-VF     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 937183..948544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN47_RS04345 (PUN47_04345) rsxB 937796..938395 (-) 600 WP_020327943.1 electron transport complex subunit RsxB -
  PUN47_RS04350 (PUN47_04350) rsxA 938395..938976 (-) 582 WP_004726646.1 electron transport complex subunit RsxA -
  PUN47_RS04360 (PUN47_04360) uvrB 939866..941896 (+) 2031 WP_202650052.1 excinuclease ABC subunit UvrB -
  PUN47_RS04365 (PUN47_04365) luxO 942183..943544 (+) 1362 WP_172560567.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PUN47_RS04370 (PUN47_04370) luxU 943551..943889 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  PUN47_RS04375 (PUN47_04375) - 943878..944768 (-) 891 WP_061056722.1 YvcK family protein -
  PUN47_RS04380 (PUN47_04380) moaA 945079..946068 (+) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  PUN47_RS04385 (PUN47_04385) moaB 946140..946652 (+) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  PUN47_RS04390 (PUN47_04390) moaC 946662..947141 (+) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  PUN47_RS04395 (PUN47_04395) moaD 947138..947383 (+) 246 WP_044365260.1 molybdopterin synthase sulfur carrier subunit -
  PUN47_RS04400 (PUN47_04400) moaE 947385..947840 (+) 456 WP_061056720.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50370.60 Da        Isoelectric Point: 5.5480

>NTDB_id=793842 PUN47_RS04365 WP_172560567.1 942183..943544(+) (luxO) [Vibrio fluvialis strain 10M-VF]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREINLNMLPPPLNQPSENIISVPKVNAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=793842 PUN47_RS04365 WP_172560567.1 942183..943544(+) (luxO) [Vibrio fluvialis strain 10M-VF]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACAGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCGGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCATTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGATGGCGGCACTCTGTTCCTTGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGTACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGTGCGACCAACCGCGACCCATGGAAAGAAGTACAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTT
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTACTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTGGAACGTTTTAAACAATACGAATGGCC
GGGTAATGTGCGTCAACTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCAATCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAACATCATCAGTGTTCCGAAGGTTAACGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGTTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGTGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.031

98.455

0.896
  pilR Pseudomonas aeruginosa PAK

39.013

98.455

0.384