Detailed information NTG0793836

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PUN47_RS02120
• Genome accession: NZ_CP118599
• Coordinates: 435551..436537 (+)
• Length: 328 a.a.
• NCBI ID: WP_274889045.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 10M-VF
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 430551..441537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUN47_RS02085 (PUN47_02085)	ftsB	430620..430901 (+)	282	WP_020330423.1	cell division protein FtsB	-
PUN47_RS02090 (PUN47_02090)	ispD	430898..431608 (+)	711	WP_044365888.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PUN47_RS02095 (PUN47_02095)	ispF	431611..432087 (+)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PUN47_RS02100 (PUN47_02100)	truD	432119..433165 (+)	1047	WP_274889043.1	tRNA pseudouridine(13) synthase TruD	-
PUN47_RS02105 (PUN47_02105)	surE	433158..433925 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
PUN47_RS02110 (PUN47_02110)	-	433918..434544 (+)	627	WP_274889044.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PUN47_RS02115 (PUN47_02115)	nlpD	434544..435479 (+)	936	WP_075988940.1	murein hydrolase activator NlpD	-
PUN47_RS02120 (PUN47_02120)	rpoS	435551..436537 (+)	987	WP_274889045.1	RNA polymerase sigma factor RpoS	Regulator
PUN47_RS02125 (PUN47_02125)	mutS	436606..439167 (-)	2562	WP_202643943.1	DNA mismatch repair protein MutS	-
PUN47_RS02130 (PUN47_02130)	pncC	439252..439740 (+)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
PUN47_RS02135 (PUN47_02135)	recA	439913..440965 (+)	1053	WP_024374201.1	recombinase RecA	Machinery gene
PUN47_RS02140 (PUN47_02140)	recX	441035..441493 (+)	459	WP_032082318.1	recombination regulator RecX	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37620.43 Da
• Isoelectric Point: 4.4439

>NTDB_id=793836 PUN47_RS02120 WP_274889045.1 435551..436537(+) (rpoS) [Vibrio fluvialis strain 10M-VF]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLGLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=793836 PUN47_RS02120 WP_274889045.1 435551..436537(+) (rpoS) [Vibrio fluvialis strain 10M-VF]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAATAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGTCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCAGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGGTCTGATTGAAGAGGGTAACCTCGGTCTGATTCGCGCGGTAGAAAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACCGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAGCTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGTGGTGACGGTGATAAAGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGCTGGTGGCTTGGCTGGATGAGCTCAATCCAAAACAGAAAGA
AGTGCTGGCACGCCGCTTTGGGTTGTTGGGCTATGAACCTTCTACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGTCGTCTGAGAGAGATCCTGATGAAACAGGGCCTGAACATGGAA
TCGCTGTTCAACGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.826	100	0.884