Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PUN47_RS02135 Genome accession   NZ_CP118599
Coordinates   439913..440965 (+) Length   350 a.a.
NCBI ID   WP_024374201.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 10M-VF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 434913..445965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN47_RS02120 (PUN47_02120) rpoS 435551..436537 (+) 987 WP_274889045.1 RNA polymerase sigma factor RpoS Regulator
  PUN47_RS02125 (PUN47_02125) mutS 436606..439167 (-) 2562 WP_202643943.1 DNA mismatch repair protein MutS -
  PUN47_RS02130 (PUN47_02130) pncC 439252..439740 (+) 489 WP_020330432.1 nicotinamide-nucleotide amidase -
  PUN47_RS02135 (PUN47_02135) recA 439913..440965 (+) 1053 WP_024374201.1 recombinase RecA Machinery gene
  PUN47_RS02140 (PUN47_02140) recX 441035..441493 (+) 459 WP_032082318.1 recombination regulator RecX -
  PUN47_RS02145 (PUN47_02145) alaS 441681..444263 (+) 2583 WP_202650832.1 alanine--tRNA ligase -
  PUN47_RS02150 (PUN47_02150) - 444470..445657 (+) 1188 WP_032082320.1 aspartate kinase -
  PUN47_RS02155 (PUN47_02155) csrA 445750..445947 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38078.56 Da        Isoelectric Point: 4.9925

>NTDB_id=793838 PUN47_RS02135 WP_024374201.1 439913..440965(+) (recA) [Vibrio fluvialis strain 10M-VF]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIS
AAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGKANACKYLRENPEVAKFIDS
KLREMLLNPEQVAVSEEPEFGSVPEQEEEF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=793838 PUN47_RS02135 WP_024374201.1 439913..440965(+) (recA) [Vibrio fluvialis strain 10M-VF]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCAGCCCTGGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CTTGGGTGACAACCGCACGATGGACGTAGAAACGATTTCTACCGGTTCACTTTCTCTGGATATCGCCTTGGGCGCGGGTG
GCCTGCCAATGGGGCGTATCGTGGAAATCTACGGTCCGGAATCCTCAGGTAAAACGACGCTGACTCTGGAACTGATCTCA
GCGGCTCAGCGCGAAGGTAAAACATGTGCCTTCATCGATGCAGAGCACGCTCTGGATCCAGTTTATGCTCGTCGTCTGGG
CGTGAAAATTGATGAACTGCTGGTGTCTCAGCCAGATACCGGTGAACAGGCGCTGGAAATCTGTGACGCATTGGCGCGTT
CAGGTGCTGTTGACGTTATCGTCGTTGACTCGGTTGCAGCACTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCGCGTATGCTGTCTCAAGCGATGCGTAAATTGACGGGTAACCTGAAACAGTCAAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACCACTACTGGTGGTAACGCAC
TGAAATTCTACGCATCTGTTCGTCTGGATATTCGTCGTACCGGTTCTATCAAAGAAGGCGATGAAGTTGTCGGTAACGAA
ACTCGTATCAAAGTAGTGAAGAACAAGATTGCGGCACCATTTAAAGAAGCCAACACGCAAATCATGTACGGCCAAGGCTT
TAACCGTGAAGGTGAGCTGATTGAACTGGGTGTGAAGCACAAGCTGGTCGAAAAAGCAGGTGCTTGGTACAGCTACAACG
GCGACAAAATTGGTCAGGGTAAAGCAAACGCTTGTAAATACCTGAGAGAAAACCCTGAAGTGGCTAAATTCATCGACAGC
AAACTGCGTGAAATGCTGCTGAACCCTGAACAAGTTGCGGTAAGCGAAGAGCCGGAATTTGGTTCAGTGCCAGAACAAGA
AGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

90.652

100

0.914
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.652

100

0.914
  recA Pseudomonas stutzeri DSM 10701

72.727

97.429

0.709
  recA Acinetobacter baumannii D1279779

71.304

98.571

0.703
  recA Acinetobacter baylyi ADP1

71.848

97.429

0.7
  recA Glaesserella parasuis strain SC1401

71.601

94.571

0.677
  recA Neisseria gonorrhoeae MS11

65.714

100

0.657
  recA Neisseria gonorrhoeae MS11

65.714

100

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.714

100

0.657
  recA Ralstonia pseudosolanacearum GMI1000

72.026

88.857

0.64
  recA Streptococcus mitis SK321

60.114

100

0.603
  recA Streptococcus mitis NCTC 12261

59.829

100

0.6
  recA Streptococcus pneumoniae TIGR4

59.714

100

0.597
  recA Streptococcus pneumoniae R6

59.714

100

0.597
  recA Streptococcus pneumoniae D39

59.714

100

0.597
  recA Streptococcus pneumoniae Rx1

59.714

100

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.294

97.143

0.586
  recA Helicobacter pylori 26695

59.706

97.143

0.58
  recA Helicobacter pylori strain NCTC11637

59.412

97.143

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.714

0.571
  recA Streptococcus mutans UA159

61.538

92.857

0.571
  recA Streptococcus pyogenes NZ131

61.231

92.857

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.403

95.714

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

94.857

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.714

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

56.125

100

0.563