Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PWW26_RS02020 Genome accession   NZ_CP118596
Coordinates   419997..421013 (+) Length   338 a.a.
NCBI ID   WP_005451497.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414997..426013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS02005 - 415370..416098 (-) 729 WP_005451494.1 redoxin family protein -
  PWW26_RS02010 oxyR 416273..417181 (+) 909 WP_005451495.1 DNA-binding transcriptional regulator OxyR -
  PWW26_RS02015 - 417248..419818 (-) 2571 WP_069687522.1 PBP1A family penicillin-binding protein -
  PWW26_RS02020 pilM 419997..421013 (+) 1017 WP_005451497.1 type IV pilus assembly protein PilM Machinery gene
  PWW26_RS02025 pilN 420997..421572 (+) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  PWW26_RS02030 pilO 421565..422158 (+) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  PWW26_RS02035 pilP 422148..422663 (+) 516 WP_274878485.1 pilus assembly protein PilP Machinery gene
  PWW26_RS02040 pilQ 422698..424449 (+) 1752 WP_274879041.1 type IV pilus secretin PilQ family protein Machinery gene
  PWW26_RS02045 aroK 424639..425157 (+) 519 WP_005451507.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38071.46 Da        Isoelectric Point: 6.4206

>NTDB_id=793782 PWW26_RS02020 WP_005451497.1 419997..421013(+) (pilM) [Vibrio harveyi strain fish10]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEIRKELPFWARRVAISVPDNA
VISKKLQIEQNLEESEKEFAVVQAFSHQSPFPVEELSLDFVKLDADEQMRGTDSYQVFATRKDVVETRVDALQKSGLKTV
LVDVHSQSLGHMWKLAVERFPEKSKYCLLDISALSSSFTMFTEQSELFHKEFPYGTRTSNDLFQQDPLAEDTQVATEQFN
RQIVDRVKRQIQLYTSINGSQDIKGIWLSGEGAATPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGKHAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=793782 PWW26_RS02020 WP_005451497.1 419997..421013(+) (pilM) [Vibrio harveyi strain fish10]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCCTTATTGGGTTACAAAGAAATAATACTTAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATAAGAAAAGAGCTGCCATTTTGGGCTCGACGGGTCGCAATTTCTGTTCCTGACAATGCC
GTGATCAGCAAGAAGCTGCAAATTGAGCAGAACTTGGAGGAGAGTGAGAAAGAGTTTGCCGTGGTGCAAGCTTTCTCGCA
TCAATCCCCATTTCCTGTTGAAGAGCTCAGTCTTGATTTTGTAAAGCTTGATGCCGATGAGCAGATGCGTGGAACAGACA
GTTATCAAGTATTCGCGACTCGCAAAGATGTCGTTGAAACTCGCGTCGATGCACTGCAAAAGTCAGGCTTGAAAACCGTG
CTGGTGGACGTGCATTCACAAAGTTTAGGGCATATGTGGAAACTGGCTGTTGAGCGCTTCCCTGAAAAGAGCAAGTATTG
CTTGTTGGATATCAGTGCATTGAGCAGCTCTTTCACCATGTTTACAGAGCAGAGTGAATTGTTCCACAAGGAATTTCCTT
ACGGCACGCGAACTTCAAATGATCTATTTCAGCAAGACCCTCTTGCTGAAGACACGCAAGTTGCTACTGAGCAGTTTAAT
CGACAAATCGTTGATCGTGTAAAGCGCCAGATTCAGCTCTATACCTCGATTAATGGTAGTCAAGACATCAAAGGCATTTG
GTTGTCTGGTGAAGGTGCAGCTACGCCAATGTTAGCAGAAGAACTTTCAAGTCAGTTGGCATTGGAGTGTGAGTTGCTTA
ATCCGCTCGGTCTATTCGAGATGAAAGTATCGAAACGCAAACGCCGTGCAGCAGATTGGCAGCATTTTACTGCGGCTGCG
GGCTTAGCGGTTAGAGGTATTCAATGGCTAGGAGGCAAACATGCTGTATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

90.533

100

0.905
  pilM Vibrio cholerae strain A1552

48.83

100

0.494