Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   PWW26_RS02035 Genome accession   NZ_CP118596
Coordinates   422148..422663 (+) Length   171 a.a.
NCBI ID   WP_274878485.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417148..427663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS02015 - 417248..419818 (-) 2571 WP_069687522.1 PBP1A family penicillin-binding protein -
  PWW26_RS02020 pilM 419997..421013 (+) 1017 WP_005451497.1 type IV pilus assembly protein PilM Machinery gene
  PWW26_RS02025 pilN 420997..421572 (+) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  PWW26_RS02030 pilO 421565..422158 (+) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  PWW26_RS02035 pilP 422148..422663 (+) 516 WP_274878485.1 pilus assembly protein PilP Machinery gene
  PWW26_RS02040 pilQ 422698..424449 (+) 1752 WP_274879041.1 type IV pilus secretin PilQ family protein Machinery gene
  PWW26_RS02045 aroK 424639..425157 (+) 519 WP_005451507.1 shikimate kinase AroK -
  PWW26_RS02050 aroB 425189..426289 (+) 1101 WP_038898114.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19128.24 Da        Isoelectric Point: 10.1513

>NTDB_id=793785 PWW26_RS02035 WP_274878485.1 422148..422663(+) (pilP) [Vibrio harveyi strain fish10]
MRSKSLLMVCIAGVLTACQANDESLTDFIRDVENQARRDVTKLQPVEEYVVVNYEPEILRAPFELPKEATIATQPVARKD
CWQPPSRKRTGKLERFPLAQLRLKGVMGIGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=793785 PWW26_RS02035 WP_274878485.1 422148..422663(+) (pilP) [Vibrio harveyi strain fish10]
ATGAGAAGTAAATCTTTGCTGATGGTGTGTATTGCTGGCGTTTTGACTGCCTGCCAAGCCAATGATGAATCACTGACGGA
TTTTATTCGTGACGTGGAGAACCAAGCTCGCCGTGATGTCACCAAACTGCAGCCTGTTGAAGAGTATGTTGTCGTTAACT
ACGAACCAGAAATATTGCGTGCACCTTTCGAATTGCCAAAAGAGGCAACGATTGCAACTCAACCTGTTGCAAGAAAAGAC
TGCTGGCAACCTCCTTCAAGAAAGCGAACTGGCAAATTGGAAAGGTTTCCTCTTGCGCAACTGCGCTTGAAGGGTGTGAT
GGGTATCGGCAGCAGTGTTTCTGGGTTGGTTCAGGCTCCGAATGGCACTGTTTACAAAGTAAAACCAGGTCAATACCTCG
GACGCAACAATGGCAAGGTTACCCATGTATCCCACAACTATTTATTGATTAATGAAACCTTGCCAGACGGTTTGGGCTGT
TGGCAAAAACGCAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.643

100

0.906
  pilP Vibrio cholerae strain A1552

59.494

92.398

0.55