Detailed information NTG0793761

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PWW24_RS16100
• Genome accession: NZ_CP118590
• Coordinates: 3403818..3404687 (+)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain fish12
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3398818..3409687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWW24_RS16080	nadC	3399184..3400071 (+)	888	WP_199449848.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PWW24_RS16085	-	3400336..3400803 (+)	468	WP_050933475.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PWW24_RS16090	pilB	3400803..3402488 (+)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PWW24_RS16095	pilC	3402522..3403745 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
PWW24_RS16100	pilD	3403818..3404687 (+)	870	WP_045488712.1	A24 family peptidase	Machinery gene
PWW24_RS16105	coaE	3404688..3405302 (+)	615	WP_050922069.1	dephospho-CoA kinase	-
PWW24_RS16110	zapD	3405330..3406070 (+)	741	WP_038897986.1	cell division protein ZapD	-
PWW24_RS16115	yacG	3406127..3406327 (+)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
PWW24_RS16120	rplS	3406893..3407246 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
PWW24_RS16125	trmD	3407288..3408031 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PWW24_RS16130	rimM	3408059..3408607 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
PWW24_RS16135	rpsP	3408636..3408884 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=793761 PWW24_RS16100 WP_045488712.1 3403818..3404687(+) (pilD) [Vibrio harveyi strain fish12]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=793761 PWW24_RS16100 WP_045488712.1 3403818..3404687(+) (pilD) [Vibrio harveyi strain fish12]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGGATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCCTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGCCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436