Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q7572_RS05160 Genome accession   NZ_CP131878
Coordinates   1080220..1082241 (+) Length   673 a.a.
NCBI ID   WP_004707569.1    Uniprot ID   A0AA36K9Y9
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075220..1087241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS05135 (Q7572_05145) - 1075553..1075963 (+) 411 WP_004885853.1 GFA family protein -
  Q7572_RS05140 (Q7572_05150) - 1076015..1077250 (-) 1236 WP_006581845.1 pyridoxal phosphate-dependent aminotransferase -
  Q7572_RS05145 (Q7572_05155) - 1077459..1077638 (+) 180 WP_000139632.1 hypothetical protein -
  Q7572_RS05150 (Q7572_05160) - 1077669..1079105 (-) 1437 WP_004885857.1 diguanylate cyclase -
  Q7572_RS05155 (Q7572_05165) - 1079249..1080040 (-) 792 WP_002052788.1 hypothetical protein -
  Q7572_RS05160 (Q7572_05170) uvrB 1080220..1082241 (+) 2022 WP_004707569.1 excinuclease ABC subunit UvrB Machinery gene
  Q7572_RS05165 (Q7572_05175) - 1082336..1082923 (+) 588 WP_002052730.1 lipocalin family protein -
  Q7572_RS05170 (Q7572_05180) rarD 1083032..1083979 (+) 948 WP_079376984.1 EamA family transporter RarD -
  Q7572_RS05175 (Q7572_05185) - 1084196..1085653 (+) 1458 WP_004885861.1 glyceraldehyde-3-phosphate dehydrogenase -
  Q7572_RS05180 (Q7572_05190) - 1085803..1086537 (+) 735 WP_004885863.1 hypothetical protein -
  Q7572_RS05185 (Q7572_05195) - 1086549..1087223 (+) 675 WP_151276955.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77234.01 Da        Isoelectric Point: 5.3351

>NTDB_id=793689 Q7572_RS05160 WP_004707569.1 1080220..1082241(+) (uvrB) [Acinetobacter nosocomialis strain 2014S01-097]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAK
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADRITD
SMQKAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVLSDDQIDEKILEQAQALSADDRHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=793689 Q7572_RS05160 WP_004707569.1 1080220..1082241(+) (uvrB) [Acinetobacter nosocomialis strain 2014S01-097]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
AAATGGCGTCGAAAAAGGTTTTCGTAATCAGTTACTTTTGGGTGTGACTGGTTCCGGTAAGACCTATACCATGGCAAACG
TGATTGCCCAAACACAGCGACCAACCATTGTGATGGCGCACAATAAGACATTAGCAGCCCAGCTTTATGGTGAATTTAAA
GCCTTTTTCCCAAATAATGCAGTTGAATACTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCTTC
AGATACATTTATTGAAAAAGATGCAGCAATTAATGACCATATTGACCAGATGCGTTTATCTGCAACACGTGCTTTATTAG
AGCGTCGTGATGCAATTATTGTAGCTTCTGTTTCTGCTATTTATGGTTTGGGTGACCCAAATGCCTATATGCAAATGTTA
TTGCATGTGGTTCAGGGTGACCGAGTGAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTTTTACGTGGTACTTATCGAATTCGTGGCGAAATTATTGATATCTTCCCGGCAGAATCTGACCAACACGCAA
TTCGTATTGAACTTTTTGATGATGAAGTAGATTCAATTCGTTGGTTTGATCCACTCACCGGTAAGATGGTGCGCAAAGTA
CCACGTGTTACGATTTATCCGAAAAGTCATTATGTAACGCCAAAAGACAACTTAACGCGTGCTATTGATACCATTAAGGA
TGAACTTCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTGCTTGAGGCTCAGCGTATCGAACAGCGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGTTATACCAATGGTATTGAAAACTACTCTCGTCATTTATCAGGCCGTCCAGCA
GGTGAAGCACCACCGACATTATTTGATTATGTACCGGACGATGCTTTACTTATTATTGATGAGTCACATGTAACGGTCCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCACGTAAAGAAAACTTGGTGAATTATGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAACGTATTGTTCCGACCACTATTTTTGTGAGTGCAACGCCAGCCAAA
TACGAGTTGGAGAAGTCAGAACAAGTGGTTGAGCAGGTCGTTCGTCCTACAGGTTTGATTGATCCTGAAATTGAAGTTCG
CCCAGTACTTACTCAAGTCGATGATGTTCTTTCTGAAATTAATATTCGTAAGAACTTAAATGAACGTGTATTGGTGACGA
CTTTAACAAAACGTATGGCGGAAGATTTAACATCTTATTTAAAAGAATATGGTGTTAAGGTCGCTTATTTGCACTCGGAT
ATTGATACGGTTGAACGTGTCAAAATTATTCATGAGTTACGTACAGGCGTATTTGATGTTTTGGTCGGTATTAACTTACT
TCGTGAAGGCTTAGATATGCCAGAGGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAGGGCTTCTTACGTTCAGAAC
GTTCACTTATTCAGACCATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAGGCAATTTTATATGCAGATAGAATTACCGAC
TCTATGCAAAAAGCAATTGATGAGACAGAACGCCGTAGAGCTAAACAAATCGAGTTTAACGAGCTGCATGGTATTACACC
ACGTAGTGCAGTCCGTCAGGCCGTGAAAGAAATTGATACGGGTGAAGTGCTTTCAGATGATCAAATTGATGAGAAAATAT
TGGAGCAGGCACAAGCACTAAGTGCTGATGACCGTCATATTCTTTCTGACCCTAAATTGTTCAGTAAGCATATTACTAAG
CTTGAGAAAGAAATGTTAAAGGCGTCTAAAGATCTACAATTTGAGCAAGCGGCTCGTATTCGTGATGAAATCGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K9Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae R6

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae D39

57.698

99.406

0.574