Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PWW29_RS15820 Genome accession   NZ_CP118582
Coordinates   3402433..3403047 (+) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain fish4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3397433..3408047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW29_RS15800 - 3397719..3398636 (-) 918 WP_005446278.1 ABC transporter ATP-binding protein -
  PWW29_RS15805 - 3398870..3400540 (-) 1671 WP_274791538.1 SulP family inorganic anion transporter -
  PWW29_RS15810 can 3400824..3401492 (+) 669 WP_005446273.1 carbonate dehydratase -
  PWW29_RS15815 hpt 3401581..3402111 (-) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  PWW29_RS15820 opaR 3402433..3403047 (+) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  PWW29_RS15825 lpdA 3403369..3404799 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  PWW29_RS15830 aceF 3405043..3406944 (-) 1902 WP_050921460.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=793621 PWW29_RS15820 WP_005446268.1 3402433..3403047(+) (opaR) [Vibrio harveyi strain fish4]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=793621 PWW29_RS15820 WP_005446268.1 3402433..3403047(+) (opaR) [Vibrio harveyi strain fish4]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGCCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAGATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCGCTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696