Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PWW22_RS12055 Genome accession   NZ_CP118578
Coordinates   2676608..2677222 (+) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain fish2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2671608..2682222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW22_RS12035 - 2671894..2672811 (-) 918 WP_005446278.1 ABC transporter ATP-binding protein -
  PWW22_RS12040 - 2673045..2674715 (-) 1671 WP_026000213.1 SulP family inorganic anion transporter -
  PWW22_RS12045 can 2674999..2675667 (+) 669 WP_005446273.1 carbonate dehydratase -
  PWW22_RS12050 hpt 2675756..2676286 (-) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  PWW22_RS12055 opaR 2676608..2677222 (+) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  PWW22_RS12060 lpdA 2677544..2678974 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  PWW22_RS12065 aceF 2679218..2681119 (-) 1902 WP_101960249.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=793516 PWW22_RS12055 WP_005446268.1 2676608..2677222(+) (opaR) [Vibrio harveyi strain fish2]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=793516 PWW22_RS12055 WP_005446268.1 2676608..2677222(+) (opaR) [Vibrio harveyi strain fish2]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAGATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGATATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696