Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PWW27_RS10665 Genome accession   NZ_CP118576
Coordinates   2310417..2311031 (+) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain fish1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2305417..2316031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW27_RS10645 - 2305703..2306620 (-) 918 WP_005446278.1 ABC transporter ATP-binding protein -
  PWW27_RS10650 - 2306854..2308524 (-) 1671 WP_274885708.1 SulP family inorganic anion transporter -
  PWW27_RS10655 can 2308808..2309476 (+) 669 WP_005446273.1 carbonate dehydratase -
  PWW27_RS10660 hpt 2309565..2310095 (-) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  PWW27_RS10665 opaR 2310417..2311031 (+) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  PWW27_RS10670 lpdA 2311353..2312783 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  PWW27_RS10675 aceF 2313027..2314928 (-) 1902 WP_274885709.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=793469 PWW27_RS10665 WP_005446268.1 2310417..2311031(+) (opaR) [Vibrio harveyi strain fish1]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=793469 PWW27_RS10665 WP_005446268.1 2310417..2311031(+) (opaR) [Vibrio harveyi strain fish1]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAAATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696