Detailed information NTG0793378

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OPY27_RS24625
• Genome accession: NZ_CP118565
• Coordinates: 5243665..5244537 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA_HN004
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5238665..5249537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPY27_RS24610 (OPY27_24600)	-	5240048..5240512 (-)	465	WP_016264268.1	pilin	-
OPY27_RS24615 (OPY27_24605)	pilB	5240743..5242443 (+)	1701	WP_241474364.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OPY27_RS24620 (OPY27_24610)	pilC	5242447..5243664 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
OPY27_RS24625 (OPY27_24615)	pilD	5243665..5244537 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
OPY27_RS24630 (OPY27_24620)	coaE	5244534..5245145 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
OPY27_RS24635 (OPY27_24625)	yacG	5245142..5245342 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
OPY27_RS24640 (OPY27_24630)	-	5245379..5245588 (-)	210	WP_003094660.1	hypothetical protein	-
OPY27_RS24645 (OPY27_24635)	-	5245694..5246383 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
OPY27_RS24650 (OPY27_24640)	-	5246380..5246850 (-)	471	WP_079280385.1	FAD/FMN-containing dehydrogenase	-
OPY27_RS24655 (OPY27_24645)	-	5246847..5247272 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
OPY27_RS24660 (OPY27_24650)	-	5247405..5248034 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
OPY27_RS24665 (OPY27_24655)	-	5248031..5248480 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
OPY27_RS24670 (OPY27_24660)	-	5248506..5248676 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=793378 OPY27_RS24625 WP_023084740.1 5243665..5244537(+) (pilD) [Pseudomonas aeruginosa strain PA_HN004]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=793378 OPY27_RS24625 WP_023084740.1 5243665..5244537(+) (pilD) [Pseudomonas aeruginosa strain PA_HN004]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472