Detailed information NTG0079324

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: KH172YL63_RS04610
• Genome accession: NZ_AP022842
• Coordinates: 939013..941136 (+)
• Length: 707 a.a.
• NCBI ID: WP_173105013.1
• Uniprot ID: -
• Organism: Bacillus sp. KH172YL63
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 934013..946136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KH172YL63_RS04590 (KH172YL63_08770)	-	934173..934910 (+)	738	WP_173105009.1	hypothetical protein	-
KH172YL63_RS04595 (KH172YL63_08780)	-	934907..935602 (+)	696	WP_173105010.1	hypothetical protein	-
KH172YL63_RS04600 (KH172YL63_08790)	-	935887..937938 (+)	2052	WP_173105011.1	catalase	-
KH172YL63_RS04605 (KH172YL63_08800)	-	938368..938757 (+)	390	WP_173105012.1	hypothetical protein	-
KH172YL63_RS04610 (KH172YL63_08810)	clpC	939013..941136 (+)	2124	WP_173105013.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
KH172YL63_RS04615 (KH172YL63_08820)	-	941287..941799 (-)	513	WP_173105014.1	CBO0543 family protein	-
KH172YL63_RS04620 (KH172YL63_08830)	-	941914..942657 (-)	744	WP_173105015.1	Cof-type HAD-IIB family hydrolase	-
KH172YL63_RS04625 (KH172YL63_08840)	-	942807..944570 (+)	1764	WP_173105016.1	ABC transporter ATP-binding protein	-
KH172YL63_RS04630 (KH172YL63_08850)	-	944573..944905 (+)	333	WP_173105017.1	MGMT family protein	-

Sequence

Protein

• Length: 707 a.a.
• Molecular weight: 78374.56 Da
• Isoelectric Point: 5.5662

>NTDB_id=79324 KH172YL63_RS04610 WP_173105013.1 939013..941136(+) (clpC) [Bacillus sp. KH172YL63]
MKCQVCQHNQATIEVYTQVNEKKSRMKMCSACFQKQQTPSGIHGGFPFDEWLKGMSMGAAQGNQAGQPSPASESGRGNNG
VLDQFGRNVTAAARAGLIDPVIGRDKEVERVIEILNRRNKNNPVLIGEPGVGKTAIAEGLARKIVAGEVPSKLLNKEVYV
IDVASLTAGTGVRGSFEERLKSIINELQNRKNVMLFIDEIHQLVGAGSAEGSMDAGNILKPSLARGELQVIGATTLKEYR
QIEKDAALERRFQPVMVNEPSLEEAVEILKGLKGRYEEYHGVEFTDEAIEACVKLSHRYIQDRFLPDKAIDLMDEAGSKV
NLLAEGKDKTALHKKLNEVRLKKEQATKAEDYEQAAVLRDEEAAIEKQISESTADSTLWVEKELIQKIIESKTGIPVGKL
QSDDRTRIKSLQENLAGKVIGQEEAVKKVAKAIRRSRAGLKAKHRPIGTFLFVGPTGVGKTELTKTLAEELFGSKDAMLR
LDMSEYMEKHSVSKLIGSPPGYVGHEESGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTVSFKE
TVIIMTSNAGVPDKKEAVVGFDTGGTDAIKETNILQLLGAYFKPEFLNRFDSIIEFQSLEKEGLLQILDLMLNELKNDLK
EQDIRLTVDEEAKQKLVELGYHPEFGARPLRRVIQERVEDKIADLLLGEEAVTDVSVTVENDEIIVK

Nucleotide

• Length: 2124 bp

>NTDB_id=79324 KH172YL63_RS04610 WP_173105013.1 939013..941136(+) (clpC) [Bacillus sp. KH172YL63]
ATGAAATGCCAAGTATGTCAGCACAACCAGGCAACAATCGAAGTATATACGCAAGTGAATGAAAAGAAGTCAAGAATGAA
GATGTGTTCTGCTTGCTTTCAAAAACAGCAGACCCCTTCTGGCATCCACGGCGGATTTCCTTTCGATGAATGGTTAAAGG
GAATGAGCATGGGTGCTGCTCAGGGAAATCAAGCAGGTCAACCTTCGCCCGCATCAGAAAGTGGCCGGGGGAACAACGGT
GTTCTTGACCAGTTCGGCCGTAATGTGACAGCTGCTGCGAGAGCAGGGTTGATCGACCCGGTCATTGGCCGTGATAAGGA
AGTTGAACGGGTCATTGAAATTCTCAACCGCCGCAATAAAAACAATCCGGTGCTGATCGGTGAGCCCGGTGTCGGTAAAA
CCGCCATTGCTGAAGGTCTCGCACGGAAAATCGTAGCTGGGGAAGTACCGTCGAAACTTCTGAATAAGGAAGTGTATGTG
ATTGATGTTGCCTCGTTGACTGCAGGTACCGGGGTAAGGGGATCCTTCGAAGAGCGTTTGAAGAGCATCATCAACGAATT
GCAAAATCGAAAGAATGTCATGCTCTTCATAGACGAAATCCACCAGCTGGTAGGGGCCGGTTCGGCAGAAGGCTCCATGG
ATGCGGGGAACATCCTGAAGCCGTCACTTGCCCGCGGCGAGCTGCAGGTGATCGGTGCGACAACCCTGAAAGAATACAGA
CAAATCGAAAAGGATGCAGCCCTGGAACGTCGTTTTCAGCCGGTGATGGTCAATGAGCCGAGCCTTGAGGAAGCCGTCGA
GATCCTGAAGGGATTGAAAGGCCGTTATGAGGAATATCATGGCGTGGAATTCACAGATGAAGCCATTGAGGCATGTGTGA
AATTATCCCACAGATACATCCAGGACCGATTCTTACCGGATAAAGCGATCGATTTGATGGATGAAGCAGGCTCGAAAGTG
AACCTGTTGGCCGAGGGGAAAGATAAAACAGCACTTCACAAGAAATTAAACGAAGTAAGATTGAAGAAAGAACAGGCAAC
GAAAGCAGAAGACTATGAACAGGCAGCGGTCCTTCGTGATGAGGAAGCGGCCATTGAAAAACAAATCAGCGAAAGTACGG
CTGACAGCACATTATGGGTAGAAAAAGAGCTGATCCAAAAGATCATCGAATCGAAAACAGGCATTCCGGTCGGGAAGCTT
CAAAGTGATGACAGAACAAGAATAAAATCTTTGCAGGAAAATCTGGCCGGCAAAGTAATCGGGCAGGAAGAAGCAGTGAA
AAAAGTGGCGAAAGCGATCCGCCGGAGCCGTGCAGGACTGAAAGCAAAGCATCGTCCCATCGGTACCTTCCTATTCGTAG
GACCTACCGGTGTCGGTAAGACGGAGTTGACGAAAACCCTGGCAGAAGAATTGTTCGGATCAAAGGATGCCATGCTGCGA
CTGGATATGAGTGAATATATGGAGAAGCACTCGGTGTCAAAACTAATCGGTTCTCCTCCAGGCTATGTTGGTCATGAAGA
ATCTGGCCAACTCACCGAGAAAGTGAGAAGAAATCCTTATTCCATCATCCTGCTCGATGAAATCGAGAAAGCACATCCGG
ATGTTCAGCACATGTTCCTGCAAATCCTTGAAGATGGACGCCTGACTGACAGTCAAGGAAGAACGGTCAGCTTTAAAGAG
ACAGTCATCATCATGACAAGTAACGCAGGTGTACCAGATAAGAAAGAAGCAGTAGTCGGTTTTGATACAGGAGGGACAGA
CGCCATCAAAGAGACGAATATCCTCCAATTACTCGGTGCTTATTTCAAACCTGAGTTCCTGAACCGATTTGACAGCATCA
TCGAATTTCAATCCCTTGAAAAAGAAGGGCTCCTTCAGATTCTCGATCTTATGCTCAATGAACTGAAAAATGATCTGAAA
GAACAGGACATTCGCCTGACTGTTGACGAAGAAGCGAAGCAGAAACTCGTTGAGCTGGGTTATCATCCAGAATTCGGGGC
CCGCCCATTGCGCCGGGTAATCCAGGAAAGAGTGGAAGACAAAATTGCCGATCTGCTTCTCGGTGAAGAAGCGGTGACCG
ATGTGAGTGTAACAGTGGAAAATGATGAGATCATTGTGAAATGA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (619-697)

• AAA lid domain (AAA_lid_9) (261-360)

• ATPase family associated with various cellular activities (AAA) (AAA) (124-255)

• AAA domain (Cdc48 subfamily) (AAA_2) (445-613)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.267	100	0.584
clpE	Streptococcus mutans UA159	54.839	100	0.577
clpE	Streptococcus pneumoniae Rx1	55.034	100	0.564
clpE	Streptococcus pneumoniae D39	55.034	100	0.564
clpE	Streptococcus pneumoniae R6	55.034	100	0.564
clpE	Streptococcus pneumoniae TIGR4	55.034	100	0.564
clpC	Bacillus subtilis subsp. subtilis str. 168	53.961	94.625	0.511
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.123	90.948	0.429
clpC	Streptococcus thermophilus LMD-9	46.047	91.231	0.42
clpC	Streptococcus thermophilus LMG 18311	45.891	91.231	0.419
clpC	Streptococcus pneumoniae Rx1	45.71	90.665	0.414
clpC	Streptococcus pneumoniae D39	45.71	90.665	0.414
clpC	Streptococcus pneumoniae TIGR4	45.71	90.665	0.414
clpC	Streptococcus mutans UA159	46.191	87.27	0.403
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.993	86.563	0.364