Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KH172YL63_RS00600 Genome accession   NZ_AP022842
Coordinates   117274..118650 (+) Length   458 a.a.
NCBI ID   WP_173104334.1    Uniprot ID   -
Organism   Bacillus sp. KH172YL63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112274..123650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH172YL63_RS00580 (KH172YL63_00890) - 112288..112749 (+) 462 WP_173104330.1 CtsR family transcriptional regulator -
  KH172YL63_RS00585 (KH172YL63_00900) - 112769..113317 (+) 549 WP_173104331.1 UvrB/UvrC motif-containing protein -
  KH172YL63_RS00590 (KH172YL63_00910) - 113314..114396 (+) 1083 WP_173104332.1 protein arginine kinase -
  KH172YL63_RS00595 (KH172YL63_00920) clpC 114398..116845 (+) 2448 WP_173104333.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  KH172YL63_RS00600 (KH172YL63_00930) radA 117274..118650 (+) 1377 WP_173104334.1 DNA repair protein RadA Machinery gene
  KH172YL63_RS00605 (KH172YL63_00940) disA 118654..119727 (+) 1074 WP_173104335.1 DNA integrity scanning diadenylate cyclase DisA -
  KH172YL63_RS00610 (KH172YL63_00950) - 119940..121031 (+) 1092 WP_173104336.1 PIN/TRAM domain-containing protein -
  KH172YL63_RS00615 (KH172YL63_00960) ispD 121111..121815 (+) 705 WP_173104337.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KH172YL63_RS00620 (KH172YL63_00970) ispF 121808..122284 (+) 477 WP_173104338.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50012.48 Da        Isoelectric Point: 6.9220

>NTDB_id=79322 KH172YL63_RS00600 WP_173104334.1 117274..118650(+) (radA) [Bacillus sp. KH172YL63]
MAKKKTKFVCSSCGYESAKWMGKCPGCNEWNTMVEEVEMTGKKPRASFMHTESNGPSKAEKLTSIETKQEPRVLTESKEL
NRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSAQLAEQKHKVLYISGEESIKQTKLRADRLHVNADELYIYAETSLELIH
QTIEQISPDFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHSYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALVTPTSF
NNPRRMATGIDHSRVSLIMAVLEKRAGMLLQQQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDKASSAHDCIIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRVILPQNNLSGWHPPSDIEVKGVSNINEALSIILGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=79322 KH172YL63_RS00600 WP_173104334.1 117274..118650(+) (radA) [Bacillus sp. KH172YL63]
TTGGCTAAGAAAAAGACGAAGTTTGTGTGTTCATCATGTGGATATGAGTCTGCGAAATGGATGGGTAAATGTCCAGGGTG
CAATGAGTGGAACACGATGGTGGAGGAAGTGGAGATGACGGGGAAGAAGCCCCGTGCGTCGTTTATGCATACTGAAAGCA
ACGGCCCTTCGAAGGCGGAGAAGCTGACTTCGATTGAAACGAAGCAGGAGCCCCGGGTGTTGACTGAATCGAAGGAATTG
AACAGGGTGCTCGGTGGAGGTGTGGTGCCGGGGTCTCTCATCTTAATCGGAGGGGACCCGGGGATCGGGAAATCCACTTT
GCTGCTTCAGGTGTCAGCTCAGCTGGCCGAGCAAAAGCATAAGGTACTTTATATATCGGGGGAGGAGTCCATTAAGCAGA
CGAAGCTGCGGGCTGATCGTTTACACGTGAATGCGGATGAGTTGTATATTTATGCGGAAACGAGTCTTGAGTTGATCCAT
CAAACGATTGAACAGATTTCTCCCGATTTTGTCATCATCGATTCGATCCAGACGATCTTTCATCCAGAGGTGACGTCAGC
CCCGGGAAGTGTATCTCAGGTAAGGGAATGTACCGCTGAGCTGATGAGGATCGGGAAGACGAAGGGCATTGCGATCTTCA
TTGTCGGGCATGTTACAAAGGAAGGTTCGATTGCGGGTCCGCGCCTGCTCGAACATATGGTCGATACGGTGCTTTACTTT
GAAGGGGAACGCCATCATTCGTACCGTATATTAAGGGCGGTAAAGAATCGTTTCGGTTCGACGAATGAGATGGGGATCTT
TGAGATGAAAGAGCTCGGGCTTGAAGAAGTGGCGAATCCTTCTGAGATCTTTTTGGAAGAACGGTCCCAGGGGGCGGCAG
GGTCGACGGTTGTCGCTTCCATGGAGGGGACGAGACCTGTGCTTGTAGAGATTCAGGCACTTGTAACCCCCACCAGCTTT
AATAACCCCCGGAGGATGGCGACGGGGATCGATCACAGCCGTGTTTCCCTGATTATGGCGGTTCTTGAGAAGCGGGCAGG
TATGCTGCTACAACAGCAGGATGCTTATTTGAAAGTAGCGGGCGGCGTGAAGCTGGATGAGCCTGCGATCGATTTGGCGG
TTGCTGCGAGCATTGCCTCAAGCTTCCGGGATAAGGCATCCAGTGCCCACGATTGTATCATCGGGGAAGTTGGCCTTACA
GGGGAAATCAGACGGGTGTCGAGGATTGAGCAACGTGTTCAGGAAGCGGCTAAGCTTGGATTCAAGCGTGTGATTCTGCC
ACAGAATAACTTGAGTGGATGGCATCCGCCGTCTGACATAGAAGTGAAAGGCGTGTCGAATATTAATGAGGCCCTCTCAA
TTATATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.319

100

0.738
  radA Streptococcus mitis SK321

64.602

98.69

0.638
  radA Streptococcus mitis NCTC 12261

64.035

99.563

0.638
  radA Streptococcus pneumoniae TIGR4

64.381

98.69

0.635
  radA Streptococcus pneumoniae Rx1

64.381

98.69

0.635
  radA Streptococcus pneumoniae D39

64.381

98.69

0.635
  radA Streptococcus pneumoniae R6

64.381

98.69

0.635

Multiple sequence alignment