Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   Q7592_RS30465 Genome accession   NZ_CP131782
Coordinates   6381273..6381797 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2016N06-105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6376273..6386797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7592_RS30450 (Q7592_30455) aroB 6377389..6378495 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  Q7592_RS30455 (Q7592_30460) aroK 6378545..6379063 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Q7592_RS30460 (Q7592_30465) pilQ 6379075..6381219 (-) 2145 Protein_6014 type 4a pilus secretin PilQ -
  Q7592_RS30465 (Q7592_30470) comL/pilP 6381273..6381797 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q7592_RS30470 (Q7592_30475) pilO 6381794..6382417 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7592_RS30475 (Q7592_30480) pilN 6382414..6383010 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  Q7592_RS30480 (Q7592_30485) pilM 6383010..6384074 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q7592_RS30485 (Q7592_30490) - 6384259..6386730 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=792945 Q7592_RS30465 WP_003095836.1 6381273..6381797(-) (comL/pilP) [Pseudomonas aeruginosa strain 2016N06-105]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=792945 Q7592_RS30465 WP_003095836.1 6381273..6381797(-) (comL/pilP) [Pseudomonas aeruginosa strain 2016N06-105]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362