Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   Q7592_RS30470 Genome accession   NZ_CP131782
Coordinates   6381794..6382417 (-) Length   207 a.a.
NCBI ID   WP_003103268.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa strain 2016N06-105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6376794..6387417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7592_RS30450 (Q7592_30455) aroB 6377389..6378495 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  Q7592_RS30455 (Q7592_30460) aroK 6378545..6379063 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Q7592_RS30460 (Q7592_30465) pilQ 6379075..6381219 (-) 2145 Protein_6014 type 4a pilus secretin PilQ -
  Q7592_RS30465 (Q7592_30470) comL/pilP 6381273..6381797 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q7592_RS30470 (Q7592_30475) pilO 6381794..6382417 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7592_RS30475 (Q7592_30480) pilN 6382414..6383010 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  Q7592_RS30480 (Q7592_30485) pilM 6383010..6384074 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q7592_RS30485 (Q7592_30490) - 6384259..6386730 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=792946 Q7592_RS30470 WP_003103268.1 6381794..6382417(-) (pilO) [Pseudomonas aeruginosa strain 2016N06-105]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=792946 Q7592_RS30470 WP_003103268.1 6381794..6382417(-) (pilO) [Pseudomonas aeruginosa strain 2016N06-105]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTGAGTGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTTGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401