Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PWS04_RS09530 Genome accession   NZ_CP118528
Coordinates   1964656..1965270 (-) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain 94/17     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959656..1970270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS04_RS09520 aceF 1960753..1962660 (+) 1908 WP_274791537.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  PWS04_RS09525 lpdA 1962904..1964334 (+) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  PWS04_RS09530 opaR 1964656..1965270 (-) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  PWS04_RS09535 hpt 1965592..1966122 (+) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  PWS04_RS09540 can 1966211..1966879 (-) 669 WP_005446273.1 carbonate dehydratase -
  PWS04_RS09545 - 1967163..1968833 (+) 1671 WP_274791538.1 SulP family inorganic anion transporter -
  PWS04_RS09550 - 1969067..1969984 (+) 918 WP_053049435.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=792898 PWS04_RS09530 WP_005446268.1 1964656..1965270(-) (opaR) [Vibrio harveyi strain 94/17]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=792898 PWS04_RS09530 WP_005446268.1 1964656..1965270(-) (opaR) [Vibrio harveyi strain 94/17]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGCCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAGATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696