Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HRS36_RS04260 Genome accession   NZ_AP022839
Coordinates   865236..867449 (-) Length   737 a.a.
NCBI ID   WP_173236364.1    Uniprot ID   -
Organism   Legionella antarctica strain TUM19329     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860236..872449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS04235 (TUM19329_08390) - 860723..861568 (-) 846 WP_173235473.1 IS3 family transposase -
  HRS36_RS04240 (TUM19329_08400) - 861558..861842 (-) 285 WP_173235475.1 transposase -
  HRS36_RS18810 - 861912..862133 (-) 222 WP_338033746.1 AAA family ATPase -
  HRS36_RS18815 - 862229..862405 (-) 177 Protein_839 AAA family ATPase -
  HRS36_RS04250 (TUM19329_08410) - 862603..863322 (-) 720 WP_173236362.1 DNA alkylation repair protein -
  HRS36_RS04255 (TUM19329_08420) - 863322..864371 (-) 1050 WP_173236363.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  HRS36_RS04260 (TUM19329_08430) comEC 865236..867449 (-) 2214 WP_173236364.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HRS36_RS04265 (TUM19329_08440) - 867574..870198 (-) 2625 WP_173236365.1 heavy metal translocating P-type ATPase -
  HRS36_RS04270 (TUM19329_08450) - 870421..870867 (+) 447 WP_173236366.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 83488.25 Da        Isoelectric Point: 9.4034

>NTDB_id=79289 HRS36_RS04260 WP_173236364.1 865236..867449(-) (comEC) [Legionella antarctica strain TUM19329]
MEIFCFLMGILYWYTSNFYLPIACLLIFFITPRYPIILLFILGMLVAWIHQYQIVTRGVPDADVIPHAILQGTIASIPIH
NINKTQFSFALEKINGHPAQGLLQLAWYNKAPPLHAGQRWELSAKIKKPRNFLNPGSYDYVNSLRKRHIDWTGYIRSKNN
KLLTASPSSFNWLQLRERLGNALLQLAPDKQKAGIIEALTLNLTTHISQENWNLFRRTGTIHLFGISGEHIALISGLVTL
ILRWVWSRSSRCCLWIPAISVASVGGLITALLYAFLAGFEPPVQRALIGCFLYTLYCLGKQRFTQWQVWRYALLGVLCLE
PHAVFMQGFYFSFLAVACLLLTQQRWRIKGYRGRLALQLSCLIGLMPLTLYWFSYGSLNGFIANLFAIPLVGLLIVPLAL
ITLCACSYTSAWMLMKPLSWLIDLLFKGLIWTEHLAGMNINWSINRLPLVLSLMGALLMWVLLPVKPFKFLAVIWLLVPF
FPPRTIIHPGEALIHVLDVGQGLAVTIQTQNHVLLYDTGDQFFQGSDLGAMVILPFYQATGIKKVDKIVISHPDKDHRGG
LKSVEAGIKVDQLLVNNTRFYDHGLNCHDYPEWQWDGISFRFLPVRETFQDKNNNSCILQVGNSIGRVLLTGDIEKISED
YLVRTYGNQLASEVLIVPHHGSKTSSSYRFLLEVAPRYAIASLGFDNRFHFPHAKTLANMTSLGIAFFKTDECGMVDITL
PLKGEIKRPECYSGLRT

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=79289 HRS36_RS04260 WP_173236364.1 865236..867449(-) (comEC) [Legionella antarctica strain TUM19329]
ATGGAAATTTTTTGCTTTTTGATGGGTATACTCTATTGGTATACCTCCAATTTTTATTTACCCATAGCCTGTTTATTAAT
CTTCTTTATCACCCCAAGATATCCAATTATTCTGCTATTTATACTTGGTATGTTAGTCGCCTGGATTCATCAATATCAAA
TAGTAACCAGAGGGGTACCTGATGCTGATGTAATTCCTCATGCCATATTACAAGGAACAATTGCCTCCATTCCAATACAC
AACATCAATAAAACACAATTTTCTTTTGCACTCGAAAAAATTAATGGGCATCCCGCCCAAGGTTTATTGCAATTAGCCTG
GTATAATAAAGCCCCCCCTTTACATGCAGGGCAACGCTGGGAGCTTAGCGCAAAAATTAAAAAACCACGGAATTTTCTTA
ATCCTGGTAGTTATGATTACGTTAACTCTCTTCGCAAACGTCACATTGATTGGACGGGTTATATTCGTTCTAAAAACAAT
AAACTATTAACTGCTTCCCCCTCTTCATTTAATTGGTTACAACTCCGAGAGCGATTAGGTAATGCCCTCTTACAATTAGC
ACCAGATAAGCAAAAAGCAGGAATTATAGAGGCCCTAACTTTAAATTTAACGACCCACATCAGCCAGGAAAACTGGAATC
TGTTCAGACGAACAGGGACTATTCATTTATTCGGTATTTCCGGGGAGCATATCGCATTGATATCAGGACTCGTTACTTTA
ATTCTAAGATGGGTATGGTCAAGGAGTAGCCGCTGTTGTTTATGGATCCCTGCCATTTCTGTAGCGAGCGTTGGCGGGCT
AATTACGGCATTACTTTATGCCTTTTTAGCAGGATTTGAACCCCCGGTACAAAGAGCTTTAATTGGGTGTTTTTTATATA
CTTTATATTGTCTGGGGAAACAGCGTTTTACTCAATGGCAAGTATGGCGTTATGCTTTATTGGGGGTGTTGTGTCTCGAA
CCCCATGCCGTTTTTATGCAAGGATTTTATTTCTCCTTTCTGGCCGTAGCGTGTTTGCTATTAACCCAGCAACGCTGGAG
AATTAAGGGATATAGAGGAAGGTTGGCGTTACAATTGAGTTGTTTGATTGGTTTGATGCCTTTAACCCTTTATTGGTTTT
CCTATGGATCGCTCAACGGATTTATTGCCAATTTATTTGCCATTCCCCTGGTCGGCTTGCTTATAGTACCTTTAGCTTTA
ATTACCCTGTGTGCCTGCTCATATACATCGGCCTGGATGTTAATGAAGCCATTATCCTGGCTTATTGATTTACTGTTTAA
GGGACTAATCTGGACAGAACACTTGGCTGGGATGAATATAAACTGGTCTATTAATAGGCTTCCTTTGGTCCTTTCATTAA
TGGGGGCTTTACTCATGTGGGTTTTATTGCCAGTCAAACCTTTCAAATTCCTGGCCGTTATTTGGCTTCTTGTTCCTTTT
TTTCCACCGCGAACTATAATTCATCCAGGAGAAGCTTTGATCCATGTTTTAGATGTAGGACAGGGATTGGCTGTGACAAT
TCAGACCCAAAATCATGTATTGCTTTATGACACTGGAGATCAGTTTTTTCAAGGTAGTGACTTGGGAGCCATGGTTATTT
TACCTTTTTATCAAGCCACAGGAATAAAAAAGGTTGATAAAATAGTGATCAGTCATCCTGATAAGGATCATCGAGGGGGA
TTAAAATCGGTCGAAGCAGGGATTAAAGTGGATCAGTTATTAGTCAATAATACTCGTTTTTATGATCATGGTTTAAATTG
CCATGACTATCCAGAATGGCAATGGGATGGGATATCCTTTCGTTTTTTGCCAGTACGCGAAACTTTTCAAGATAAAAATA
ACAACTCCTGCATTTTACAAGTAGGAAACTCGATTGGACGTGTTTTACTAACAGGTGATATAGAAAAAATTAGTGAGGAC
TATCTGGTACGAACTTATGGAAATCAATTGGCATCTGAGGTGTTAATTGTCCCGCATCATGGAAGTAAAACTTCTTCATC
TTATCGATTTTTACTTGAAGTGGCACCTCGTTATGCTATTGCTTCATTAGGCTTTGATAATCGATTTCATTTCCCACATG
CCAAAACCCTCGCCAATATGACCTCCCTAGGCATTGCTTTTTTTAAAACAGACGAATGTGGCATGGTAGATATAACCCTT
CCCCTCAAAGGAGAAATAAAAAGACCTGAATGTTATAGTGGCTTAAGAACATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(199-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)

Domain of unknown function (DUF4131) (DUF4131)

(22-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

68.163

99.729

0.68
  comEC Legionella pneumophila strain ERS1305867

67.579

99.186

0.67

Multiple sequence alignment