Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   HRS36_RS02885 Genome accession   NZ_AP022839
Coordinates   563678..564337 (+) Length   219 a.a.
NCBI ID   WP_173236168.1    Uniprot ID   A0A6F8T1V3
Organism   Legionella antarctica strain TUM19329     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 558678..569337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRS36_RS02855 (TUM19329_05580) - 558952..559605 (-) 654 WP_173236162.1 50S ribosomal protein L25/general stress protein Ctc -
  HRS36_RS02860 (TUM19329_05590) rplU 559804..560115 (+) 312 WP_173236163.1 50S ribosomal protein L21 -
  HRS36_RS02865 (TUM19329_05600) rpmA 560128..560406 (+) 279 WP_173236164.1 50S ribosomal protein L27 -
  HRS36_RS02870 (TUM19329_05610) cgtA 560469..561494 (+) 1026 WP_173236165.1 Obg family GTPase CgtA -
  HRS36_RS02875 (TUM19329_05620) - 561450..562547 (-) 1098 WP_173236166.1 competence/damage-inducible protein A -
  HRS36_RS02880 (TUM19329_05630) phhA 562721..563539 (+) 819 WP_173236167.1 phenylalanine 4-monooxygenase -
  HRS36_RS02885 (TUM19329_05640) letA 563678..564337 (+) 660 WP_173236168.1 two-component system response regulator LetA Regulator
  HRS36_RS02890 (TUM19329_05650) uvrC 564349..566205 (+) 1857 WP_173236169.1 excinuclease ABC subunit UvrC -
  HRS36_RS02895 (TUM19329_05660) - 567116..567838 (+) 723 WP_173236170.1 L,D-transpeptidase -
  HRS36_RS02900 (TUM19329_05670) - 567835..568392 (+) 558 WP_173236171.1 endopeptidase IV -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24565.65 Da        Isoelectric Point: 5.3993

>NTDB_id=79286 HRS36_RS02885 WP_173236168.1 563678..564337(+) (letA) [Legionella antarctica strain TUM19329]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALLLVKTHAPDVVLLDMKMPGIDGWEVTRRLKKSNPHIKVIA
VTAMSSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEAQDSPFDMLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIERPSDLTQDE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=79286 HRS36_RS02885 WP_173236168.1 563678..564337(+) (letA) [Legionella antarctica strain TUM19329]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGTATTCGACGATTGCTTGAAGATATGTCGGACGT
AGATGTTGTTGCTGATGCTGAAAGTGGTGAGCAAGCTTTACTATTAGTAAAAACACATGCACCTGATGTAGTCCTTTTAG
ATATGAAAATGCCTGGTATTGATGGATGGGAAGTCACTCGTCGATTAAAAAAGTCAAACCCGCACATTAAAGTAATTGCC
GTTACAGCAATGTCCTCTGACCCTCTCCCAACTCGTGTTTTGCAATTAGGTGCCATGGGCTACCTGACAAAAGAATCAGG
GGCTGAGGAGATGGCTGCTGCAATACGAAAAGTAGCTAAAGGTGAAAAGTACCTCAGTGCTGAAATTGCCCAAAAAATGG
CAATTAACAGTTTACAAGAAGCCCAGGACTCCCCTTTTGATATGTTGTCAGAGCGAGAGATGCAAGTCATGCTAATGATT
ACAAGTGGCATGAATGTTCAGGATATTGCAGATAGACTGTTTTTAAGTAGTAAGACAATTAATGGATACAGATACAGGAT
GTTTGAGAAGTTAGGAATTAAAAATGATGTCGAACTTACTTATTTAGCGATGAAACATCGCATCATAGAGCGGCCTTCAG
ATTTAACGCAAGACGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8T1V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

94.064

100

0.941
  letA Legionella pneumophila strain ERS1305867

94.064

100

0.941

Multiple sequence alignment