Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | HRS36_RS01240 | Genome accession | NZ_AP022839 |
| Coordinates | 237965..238651 (+) | Length | 228 a.a. |
| NCBI ID | WP_173235782.1 | Uniprot ID | A0A6F8T140 |
| Organism | Legionella antarctica strain TUM19329 | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 232965..243651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRS36_RS01220 (TUM19329_02440) | - | 233782..233958 (-) | 177 | WP_173235776.1 | dodecin domain-containing protein | - |
| HRS36_RS01225 (TUM19329_02450) | - | 234136..236592 (+) | 2457 | WP_173235778.1 | oxidoreductase | - |
| HRS36_RS01230 (TUM19329_02460) | dapB | 236692..237423 (-) | 732 | WP_173235780.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| HRS36_RS01235 (TUM19329_02470) | - | 237494..237676 (-) | 183 | WP_173238406.1 | hypothetical protein | - |
| HRS36_RS01240 (TUM19329_02480) | rocC | 237965..238651 (+) | 687 | WP_173235782.1 | ProQ/FinO family protein | Regulator |
| HRS36_RS01245 (TUM19329_02490) | - | 238653..239735 (+) | 1083 | WP_173235784.1 | hypothetical protein | - |
| HRS36_RS01250 (TUM19329_02500) | - | 239766..241007 (-) | 1242 | WP_173235786.1 | hypothetical protein | - |
| HRS36_RS01255 | - | 241410..242006 (-) | 597 | WP_197933204.1 | hypothetical protein | - |
| HRS36_RS01260 (TUM19329_02510) | pyk | 242061..243488 (-) | 1428 | WP_173235788.1 | pyruvate kinase | - |
Sequence
Protein
Download Length: 228 a.a. Molecular weight: 25216.89 Da Isoelectric Point: 10.6208
>NTDB_id=79284 HRS36_RS01240 WP_173235782.1 237965..238651(+) (rocC) [Legionella antarctica strain TUM19329]
MRKQELHPRTAVINKSQKNKSKKARIDALSWLALNFPNAFDNSVQISPLKKGIMDDIMLHADKAAEANISKSKLREAVVL
FTRRLDYLACLKAREMRVDLQGNTVSEVTTEEAEHAAVKIKKRIEKGVRNARKIMAEKNAGQSIPQQPTGNATKSTNQPS
SGTDDYLPTYPARGPAYGAQSVSPQPARSAAVVVKHKTTRQYDPDAVARLKEKLGLSRSLEEKKVTAE
MRKQELHPRTAVINKSQKNKSKKARIDALSWLALNFPNAFDNSVQISPLKKGIMDDIMLHADKAAEANISKSKLREAVVL
FTRRLDYLACLKAREMRVDLQGNTVSEVTTEEAEHAAVKIKKRIEKGVRNARKIMAEKNAGQSIPQQPTGNATKSTNQPS
SGTDDYLPTYPARGPAYGAQSVSPQPARSAAVVVKHKTTRQYDPDAVARLKEKLGLSRSLEEKKVTAE
Nucleotide
Download Length: 687 bp
>NTDB_id=79284 HRS36_RS01240 WP_173235782.1 237965..238651(+) (rocC) [Legionella antarctica strain TUM19329]
ATGAGAAAACAGGAGCTGCATCCGCGCACCGCTGTCATTAATAAAAGCCAAAAAAATAAATCTAAAAAAGCCCGAATCGA
TGCCTTATCGTGGCTTGCGCTTAATTTCCCCAATGCATTTGATAATTCCGTACAGATAAGCCCCTTGAAAAAAGGAATCA
TGGATGACATCATGCTTCATGCAGACAAAGCTGCAGAAGCGAATATTTCAAAAAGCAAATTAAGAGAGGCGGTTGTTCTG
TTTACCCGTCGTCTTGATTACCTGGCTTGTCTTAAGGCTCGGGAAATGCGCGTTGATTTGCAAGGAAATACGGTATCCGA
AGTCACTACAGAAGAGGCAGAGCATGCTGCTGTTAAAATAAAAAAACGTATAGAAAAAGGTGTGCGAAATGCGCGTAAAA
TAATGGCAGAAAAAAATGCAGGGCAATCAATACCTCAACAACCAACTGGGAACGCAACAAAATCAACCAATCAACCGTCT
TCAGGAACAGATGATTATTTACCAACCTATCCAGCTCGAGGCCCTGCGTATGGTGCTCAAAGTGTATCACCGCAACCAGC
CCGATCCGCGGCAGTTGTTGTGAAACATAAAACCACCAGGCAGTACGATCCTGATGCTGTAGCTCGCTTGAAGGAAAAAC
TGGGTTTGTCTCGCAGTTTAGAAGAGAAAAAAGTAACGGCGGAGTAA
ATGAGAAAACAGGAGCTGCATCCGCGCACCGCTGTCATTAATAAAAGCCAAAAAAATAAATCTAAAAAAGCCCGAATCGA
TGCCTTATCGTGGCTTGCGCTTAATTTCCCCAATGCATTTGATAATTCCGTACAGATAAGCCCCTTGAAAAAAGGAATCA
TGGATGACATCATGCTTCATGCAGACAAAGCTGCAGAAGCGAATATTTCAAAAAGCAAATTAAGAGAGGCGGTTGTTCTG
TTTACCCGTCGTCTTGATTACCTGGCTTGTCTTAAGGCTCGGGAAATGCGCGTTGATTTGCAAGGAAATACGGTATCCGA
AGTCACTACAGAAGAGGCAGAGCATGCTGCTGTTAAAATAAAAAAACGTATAGAAAAAGGTGTGCGAAATGCGCGTAAAA
TAATGGCAGAAAAAAATGCAGGGCAATCAATACCTCAACAACCAACTGGGAACGCAACAAAATCAACCAATCAACCGTCT
TCAGGAACAGATGATTATTTACCAACCTATCCAGCTCGAGGCCCTGCGTATGGTGCTCAAAGTGTATCACCGCAACCAGC
CCGATCCGCGGCAGTTGTTGTGAAACATAAAACCACCAGGCAGTACGATCCTGATGCTGTAGCTCGCTTGAAGGAAAAAC
TGGGTTTGTCTCGCAGTTTAGAAGAGAAAAAAGTAACGGCGGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
64.783 |
100 |
0.654 |