Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PVE41_RS07250 Genome accession   NZ_CP118438
Coordinates   1498213..1498803 (-) Length   196 a.a.
NCBI ID   WP_131069608.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493213..1503803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS07225 (PVE41_07225) aroB 1493486..1494577 (-) 1092 WP_061058951.1 3-dehydroquinate synthase -
  PVE41_RS07230 (PVE41_07230) aroK 1494610..1495128 (-) 519 WP_011079357.1 shikimate kinase AroK -
  PVE41_RS07235 (PVE41_07235) pilQ 1495330..1497114 (-) 1785 WP_011079356.1 type IV pilus secretin PilQ family protein Machinery gene
  PVE41_RS07240 (PVE41_07240) pilP 1497128..1497640 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  PVE41_RS07245 (PVE41_07245) pilO 1497630..1498220 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  PVE41_RS07250 (PVE41_07250) pilN 1498213..1498803 (-) 591 WP_131069608.1 PilN domain-containing protein Machinery gene
  PVE41_RS07255 (PVE41_07255) pilM 1498793..1499800 (-) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  PVE41_RS07260 (PVE41_07260) - 1499940..1502453 (+) 2514 WP_131069607.1 PBP1A family penicillin-binding protein -
  PVE41_RS07265 (PVE41_07265) oxyR 1502524..1503423 (-) 900 WP_011079350.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22672.96 Da        Isoelectric Point: 8.4848

>NTDB_id=792541 PVE41_RS07250 WP_131069608.1 1498213..1498803(-) (pilN) [Vibrio vulnificus strain 1908-10]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDKRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=792541 PVE41_RS07250 WP_131069608.1 1498213..1498803(-) (pilN) [Vibrio vulnificus strain 1908-10]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATAAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAAATGCATTCAATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

62.712

90.306

0.566