Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PVE41_RS07255 Genome accession   NZ_CP118438
Coordinates   1498793..1499800 (-) Length   335 a.a.
NCBI ID   WP_017419656.1    Uniprot ID   A0A087I1V6
Organism   Vibrio vulnificus strain 1908-10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493793..1504800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS07230 (PVE41_07230) aroK 1494610..1495128 (-) 519 WP_011079357.1 shikimate kinase AroK -
  PVE41_RS07235 (PVE41_07235) pilQ 1495330..1497114 (-) 1785 WP_011079356.1 type IV pilus secretin PilQ family protein Machinery gene
  PVE41_RS07240 (PVE41_07240) pilP 1497128..1497640 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  PVE41_RS07245 (PVE41_07245) pilO 1497630..1498220 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  PVE41_RS07250 (PVE41_07250) pilN 1498213..1498803 (-) 591 WP_131069608.1 PilN domain-containing protein Machinery gene
  PVE41_RS07255 (PVE41_07255) pilM 1498793..1499800 (-) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  PVE41_RS07260 (PVE41_07260) - 1499940..1502453 (+) 2514 WP_131069607.1 PBP1A family penicillin-binding protein -
  PVE41_RS07265 (PVE41_07265) oxyR 1502524..1503423 (-) 900 WP_011079350.1 DNA-binding transcriptional regulator OxyR -
  PVE41_RS07270 (PVE41_07270) - 1503697..1503969 (+) 273 WP_011079349.1 DUF3624 domain-containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37654.05 Da        Isoelectric Point: 6.3873

>NTDB_id=792542 PVE41_RS07255 WP_017419656.1 1498793..1499800(-) (pilM) [Vibrio vulnificus strain 1908-10]
MGKPFVTGIDIGHRSLKAVILKPYGEHYALLGYKEIIIKDGIFSDNHTLNHQEIVNSLKELKKELPLFRYQVSLAVPDSS
VISKMLSIDAELDGREREFAILQAFAHQSPFPVDELSIDYVQLVEETSKTNHSYQVYATKKEVVESRVRVAEEVGLKPVL
VDVHAHSLCNILTLAAERHPDKASYCLLDVGYDTTSLVMSRRNEPPLVKEFAYGVSHLNASIGDDLTSPDAHEKTDIFNK
ELTERVRRQLQLFQSMDSQSKVNGLWICGEGAITPLLSETLQRKLSLECEVLNPLALFEQKTAKRKRRIVDWHHFSVAAG
LAIGGIQWLEDSHAA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=792542 PVE41_RS07255 WP_017419656.1 1498793..1499800(-) (pilM) [Vibrio vulnificus strain 1908-10]
ATGGGTAAGCCGTTCGTTACCGGAATTGATATTGGTCATCGTAGCCTCAAGGCTGTCATTCTGAAACCTTATGGAGAGCA
CTACGCCCTGTTAGGGTACAAAGAAATAATCATTAAAGACGGTATTTTCTCAGATAACCACACTCTGAATCATCAAGAAA
TTGTCAATAGCCTGAAAGAACTGAAGAAGGAACTGCCTCTTTTCCGTTATCAGGTGTCATTGGCGGTGCCTGATAGTTCA
GTGATTAGTAAGATGTTATCAATCGATGCGGAGTTGGATGGTCGAGAGCGAGAATTCGCTATCCTTCAGGCGTTTGCACA
TCAGTCGCCATTTCCTGTCGATGAATTATCGATTGATTATGTCCAATTGGTCGAAGAAACCAGCAAAACGAATCATAGCT
ATCAAGTGTACGCCACCAAAAAAGAGGTGGTGGAAAGCCGTGTGCGTGTCGCAGAAGAAGTGGGACTGAAACCCGTGCTG
GTAGATGTGCATGCGCATAGCCTGTGCAACATCTTAACGTTAGCGGCAGAGCGCCATCCAGATAAAGCCAGCTATTGCTT
GTTGGATGTGGGTTATGACACCACCTCTTTGGTGATGTCGCGTCGCAACGAACCGCCTTTAGTTAAAGAATTTGCCTATG
GGGTGTCTCACCTCAATGCGTCGATAGGCGACGATCTGACTTCTCCTGATGCTCATGAGAAAACCGACATCTTTAATAAA
GAACTGACAGAGCGAGTTCGTCGGCAATTGCAGCTGTTCCAATCTATGGATAGCCAAAGCAAAGTGAATGGCCTCTGGAT
CTGCGGTGAAGGCGCGATTACTCCGTTGTTGAGTGAAACGTTGCAGAGAAAGCTGAGTTTGGAGTGCGAAGTCCTTAATC
CTCTGGCTCTGTTTGAGCAAAAAACGGCGAAAAGAAAGCGCCGTATTGTTGATTGGCACCATTTTTCGGTGGCAGCGGGA
TTAGCGATTGGTGGCATTCAGTGGCTGGAGGATAGCCATGCAGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087I1V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

53.134

100

0.531
  pilM Vibrio cholerae strain A1552

48.974

100

0.499