Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PVE41_RS06020 Genome accession   NZ_CP118438
Coordinates   1249108..1249725 (+) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus strain 1908-10     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244108..1254725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS06000 (PVE41_06000) - 1244421..1245344 (-) 924 WP_011079562.1 ABC transporter ATP-binding protein -
  PVE41_RS06005 (PVE41_06005) - 1245511..1247181 (-) 1671 WP_282500153.1 SulP family inorganic anion transporter -
  PVE41_RS06010 (PVE41_06010) can 1247423..1248091 (+) 669 WP_013571146.1 carbonate dehydratase -
  PVE41_RS06015 (PVE41_06015) hpt 1248186..1248716 (-) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  PVE41_RS06020 (PVE41_06020) opaR 1249108..1249725 (+) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  PVE41_RS06025 (PVE41_06025) lpdA 1249858..1251285 (-) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  PVE41_RS06030 (PVE41_06030) aceF 1251543..1253435 (-) 1893 WP_013571144.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=792524 PVE41_RS06020 WP_011079558.1 1249108..1249725(+) (opaR) [Vibrio vulnificus strain 1908-10]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=792524 PVE41_RS06020 WP_011079558.1 1249108..1249725(+) (opaR) [Vibrio vulnificus strain 1908-10]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGTGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAACCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCGACGCGTGATGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GTACTAATCAATTGCTGGTACAAAACATGTTCATCAAAGCCATTGAGCGTGGTGAAGTGTGTGACCAACACAACCCAGAA
GATTTGGCGAACTTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGTACCAACAATACCGCAGAGCTCAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAGCACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707