Detailed information NTG0792466

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HX883_RS21240
• Genome accession: NZ_CP118405
• Coordinates: 4352134..4352934 (+)
• Length: 266 a.a.
• NCBI ID: WP_032419388.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain F3-2P(2*)
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4347134..4357934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HX883_RS21205 (HX883_021205)	gspH	4347290..4347805 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
HX883_RS21210 (HX883_021210)	gspI	4347802..4348167 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HX883_RS21215 (HX883_021215)	gspJ	4348164..4348760 (+)	597	WP_032419387.1	type II secretion system minor pseudopilin GspJ	-
HX883_RS21220 (HX883_021220)	gspK	4348757..4349743 (+)	987	WP_077259564.1	type II secretion system minor pseudopilin GspK	-
HX883_RS21225 (HX883_021225)	gspL	4349730..4350923 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
HX883_RS21230 (HX883_021230)	-	4350916..4351401 (+)	486	WP_004145896.1	type II secretion system protein M	-
HX883_RS21235 (HX883_021235)	-	4351391..4352137 (+)	747	WP_004145897.1	type II secretion system protein N	-
HX883_RS21240 (HX883_021240)	pilD	4352134..4352934 (+)	801	WP_032419388.1	A24 family peptidase	Machinery gene
HX883_RS21245 (HX883_021245)	hrpB	4352982..4355411 (-)	2430	WP_032419389.1	ATP-dependent helicase HrpB	-
HX883_RS21250 (HX883_021250)	thpR	4355484..4356020 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HX883_RS21255 (HX883_021255)	sfsA	4356020..4356736 (+)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
HX883_RS21260 (HX883_021260)	dksA	4356899..4357354 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29477.07 Da
• Isoelectric Point: 8.6098

>NTDB_id=792466 HX883_RS21240 WP_032419388.1 4352134..4352934(+) (pilD) [Klebsiella pneumoniae strain F3-2P(2*)]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTEDDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLTPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=792466 HX883_RS21240 WP_032419388.1 4352134..4352934(+) (pilD) [Klebsiella pneumoniae strain F3-2P(2*)]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGAGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGACGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425