Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PSR12_RS23720 Genome accession   NZ_CP118397
Coordinates   4668458..4669024 (-) Length   188 a.a.
NCBI ID   WP_054548816.1    Uniprot ID   -
Organism   Lysinibacillus sp. G01H     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4634483..4669024 4668458..4669024 within 0


Gene organization within MGE regions


Location: 4634483..4669024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR12_RS23570 (PSR12_23570) - 4634483..4635022 (-) 540 WP_274771059.1 VUT family protein -
  PSR12_RS23575 (PSR12_23575) queE 4635064..4635792 (-) 729 WP_221682451.1 7-carboxy-7-deazaguanine synthase QueE -
  PSR12_RS23580 (PSR12_23580) queD 4635785..4636255 (-) 471 WP_221682452.1 6-carboxytetrahydropterin synthase QueD -
  PSR12_RS23585 (PSR12_23585) queC 4636259..4636918 (-) 660 WP_274771061.1 7-cyano-7-deazaguanine synthase QueC -
  PSR12_RS23590 (PSR12_23590) queF 4637023..4637523 (-) 501 WP_004233404.1 preQ(1) synthase -
  PSR12_RS23595 (PSR12_23595) - 4638006..4641677 (+) 3672 WP_274771063.1 S8 family serine peptidase -
  PSR12_RS23600 (PSR12_23600) - 4641847..4642590 (-) 744 WP_274771064.1 amino acid ABC transporter ATP-binding protein -
  PSR12_RS23605 (PSR12_23605) - 4642603..4643268 (-) 666 WP_221682454.1 amino acid ABC transporter permease -
  PSR12_RS23610 (PSR12_23610) - 4643300..4644082 (-) 783 WP_221682455.1 transporter substrate-binding domain-containing protein -
  PSR12_RS23615 (PSR12_23615) - 4644744..4646642 (+) 1899 WP_274771066.1 hypothetical protein -
  PSR12_RS23620 (PSR12_23620) rlmH 4646740..4647219 (-) 480 WP_274771068.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PSR12_RS23625 (PSR12_23625) - 4647310..4647474 (-) 165 WP_004233391.1 CxxH/CxxC protein -
  PSR12_RS23630 (PSR12_23630) - 4647719..4649014 (-) 1296 WP_221682458.1 trypsin-like peptidase domain-containing protein -
  PSR12_RS23635 (PSR12_23635) - 4649181..4649969 (-) 789 WP_048395252.1 MBL fold metallo-hydrolase -
  PSR12_RS23640 (PSR12_23640) yycI 4649969..4650793 (-) 825 WP_257520865.1 two-component system regulatory protein YycI -
  PSR12_RS23645 (PSR12_23645) yycH 4650780..4652105 (-) 1326 WP_221682460.1 two-component system activity regulator YycH -
  PSR12_RS23650 (PSR12_23650) walK 4652102..4653967 (-) 1866 WP_221682461.1 cell wall metabolism sensor histidine kinase WalK -
  PSR12_RS23655 (PSR12_23655) yycF 4653973..4654686 (-) 714 WP_221682462.1 response regulator YycF -
  PSR12_RS23660 (PSR12_23660) - 4654901..4656361 (-) 1461 WP_221682463.1 M23 family metallopeptidase -
  PSR12_RS23665 (PSR12_23665) - 4656763..4657602 (+) 840 WP_255601677.1 YitT family protein -
  PSR12_RS23670 (PSR12_23670) - 4657714..4659044 (+) 1331 WP_274770259.1 IS3 family transposase -
  PSR12_RS23675 (PSR12_23675) - 4659112..4660401 (-) 1290 WP_004233375.1 adenylosuccinate synthase -
  PSR12_RS23680 (PSR12_23680) dnaB 4660646..4662007 (-) 1362 WP_004233370.1 replicative DNA helicase -
  PSR12_RS23685 (PSR12_23685) rplI 4662021..4662467 (-) 447 WP_004233368.1 50S ribosomal protein L9 -
  PSR12_RS23690 (PSR12_23690) - 4662467..4664437 (-) 1971 WP_004233367.1 DHH family phosphoesterase -
  PSR12_RS23695 (PSR12_23695) - 4664451..4665392 (-) 942 WP_221682465.1 YybS family protein -
  PSR12_RS23700 (PSR12_23700) - 4665854..4666603 (-) 750 WP_221682466.1 hypothetical protein -
  PSR12_RS23705 (PSR12_23705) - 4666603..4667094 (-) 492 WP_004233363.1 RNA polymerase sigma factor -
  PSR12_RS23710 (PSR12_23710) - 4667374..4667757 (-) 384 WP_221682467.1 hypothetical protein -
  PSR12_RS23715 (PSR12_23715) rpsR 4668181..4668417 (-) 237 WP_004233359.1 30S ribosomal protein S18 -
  PSR12_RS23720 (PSR12_23720) ssbA 4668458..4669024 (-) 567 WP_054548816.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20537.50 Da        Isoelectric Point: 4.7719

>NTDB_id=792425 PSR12_RS23720 WP_054548816.1 4668458..4669024(-) (ssbA) [Lysinibacillus sp. G01H]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRAFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGQTYGNNQPSYGGGQPQQQFSGAMPGQGSYGGDSYQQNQPPMN
QPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=792425 PSR12_RS23720 WP_054548816.1 4668458..4669024(-) (ssbA) [Lysinibacillus sp. G01H]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCGAATGGAGTTGCGTCTAC
AAGATTTACAGTAGCTGTAAACCGTGCATTCTCAAATCAACAAGGTGAACGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAGACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTCGTGGCGGATAGCGTACAGTTTTTAGAACCCCGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATATGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAACCAC
AACAACAGTTTAGTGGCGCTATGCCAGGGCAGGGTTCCTATGGCGGCGATTCGTATCAGCAAAATCAACCACCTATGAAT
CAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCGAATAGCAAAGGGCCAATAGAAGTATCTGAGGATGATCTTCC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.319

100

0.553
  ssb Latilactobacillus sakei subsp. sakei 23K

47.34

100

0.473