Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QMM33_RS00195 Genome accession   NZ_AP025940
Coordinates   36253..37023 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31253..42023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM33_RS00175 (PC0204_00280) - 33128..33565 (+) 438 WP_000076485.1 CoA-binding protein -
  QMM33_RS00180 (PC0204_00290) - 33606..33899 (+) 294 WP_050257889.1 hypothetical protein -
  QMM33_RS00185 (PC0204_00300) - 33928..34938 (-) 1011 WP_000009169.1 YeiH family protein -
  QMM33_RS00190 (PC0204_00310) - 35087..36256 (+) 1170 WP_000366347.1 pyridoxal phosphate-dependent aminotransferase -
  QMM33_RS00195 (PC0204_00320) recO 36253..37023 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  QMM33_RS00200 (PC0204_00330) plsX 37020..38012 (+) 993 WP_050207082.1 phosphate acyltransferase PlsX -
  QMM33_RS00205 (PC0204_00340) - 38018..38251 (+) 234 WP_000136447.1 acyl carrier protein -
  QMM33_RS00210 (PC0204_00350) - 38297..38587 (+) 291 Protein_34 IS5/IS1182 family transposase -
  QMM33_RS00215 (PC0204_00360) blpU 38790..39020 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  QMM33_RS00220 - 39023..39148 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  QMM33_RS00225 - 39559..39753 (+) 195 WP_000756776.1 hypothetical protein -
  QMM33_RS00230 (PC0204_00370) comR 39774..40667 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  QMM33_RS00235 (PC0204_00380) - 41197..41493 (+) 297 WP_281734509.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=79239 QMM33_RS00195 WP_000616162.1 36253..37023(+) (recO) [Streptococcus pneumoniae strain PZ900700204]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=79239 QMM33_RS00195 WP_000616162.1 36253..37023(+) (recO) [Streptococcus pneumoniae strain PZ900700204]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGATAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996

Multiple sequence alignment