Detailed information NTG0792320

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PVK56_RS21645
• Genome accession: NZ_CP118369
• Coordinates: 4537669..4538466 (+)
• Length: 265 a.a.
• NCBI ID: WP_327204281.1
• Uniprot ID: -
• Organism: Raoultella ornithinolytica strain YZSHE173
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4532669..4543466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PVK56_RS21610 (PVK56_21605)	gspH	4532822..4533307 (+)	486	WP_394467853.1	type II secretion system minor pseudopilin GspH	-
PVK56_RS21615 (PVK56_21610)	gspI	4533304..4533669 (+)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
PVK56_RS21620 (PVK56_21615)	gspJ	4533681..4534265 (+)	585	WP_086817261.1	type II secretion system minor pseudopilin GspJ	-
PVK56_RS21625 (PVK56_21620)	gspK	4534262..4535248 (+)	987	WP_394467598.1	type II secretion system minor pseudopilin GspK	-
PVK56_RS21630 (PVK56_21625)	gspL	4535235..4536437 (+)	1203	WP_004858036.1	type II secretion system protein GspL	-
PVK56_RS21635 (PVK56_21630)	gspM	4536430..4536924 (+)	495	WP_044348321.1	type II secretion system protein GspM	-
PVK56_RS21640 (PVK56_21635)	-	4536914..4537654 (+)	741	WP_032716580.1	type II secretion system protein N	-
PVK56_RS21645 (PVK56_21640)	pilD	4537669..4538466 (+)	798	WP_327204281.1	A24 family peptidase	Machinery gene
PVK56_RS21650 (PVK56_21645)	hrpB	4538487..4540916 (-)	2430	WP_048024062.1	ATP-dependent helicase HrpB	-
PVK56_RS21655 (PVK56_21650)	thpR	4540989..4541525 (+)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
PVK56_RS21660 (PVK56_21655)	sfsA	4541525..4542241 (+)	717	WP_004858020.1	DNA/RNA nuclease SfsA	-
PVK56_RS21665 (PVK56_21660)	dksA	4542406..4542861 (+)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29275.89 Da
• Isoelectric Point: 8.4762

>NTDB_id=792320 PVK56_RS21645 WP_327204281.1 4537669..4538466(+) (pilD) [Raoultella ornithinolytica strain YZSHE173]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLAGYLLTPGLSLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=792320 PVK56_RS21645 WP_327204281.1 4537669..4538466(+) (pilD) [Raoultella ornithinolytica strain YZSHE173]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GGCCGGCTATCTGCTGACGCCGGGATTATCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (122-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.479
pilD	Neisseria gonorrhoeae MS11	46.614	94.717	0.442
pilD	Acinetobacter baumannii D1279779	45.276	95.849	0.434
pilD	Acinetobacter nosocomialis M2	44.882	95.849	0.43