Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   Q7615_RS01835 Genome accession   NZ_CP131718
Coordinates   352320..353555 (-) Length   411 a.a.
NCBI ID   WP_005658618.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016S11-301     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 347320..358555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7615_RS01800 (Q7615_01800) - 347815..348435 (-) 621 WP_011272188.1 YigZ family protein -
  Q7615_RS01805 (Q7615_01805) tusA 348551..348790 (+) 240 WP_005665561.1 sulfurtransferase TusA -
  Q7615_RS01810 (Q7615_01810) htpX 348832..349686 (-) 855 WP_162837812.1 protease HtpX -
  Q7615_RS01815 (Q7615_01815) - 349851..350240 (-) 390 WP_005630808.1 RidA family protein -
  Q7615_RS01820 (Q7615_01820) - 350297..351049 (-) 753 WP_005648600.1 VacJ family lipoprotein -
  Q7615_RS01825 (Q7615_01825) nusG 351200..351757 (-) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  Q7615_RS01830 (Q7615_01830) secE 351759..352175 (-) 417 WP_005658616.1 preprotein translocase subunit SecE -
  Q7615_RS01835 (Q7615_01835) clpX 352320..353555 (-) 1236 WP_005658618.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  Q7615_RS01840 (Q7615_01840) clpP 353565..354176 (-) 612 WP_257003823.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  Q7615_RS01845 (Q7615_01845) tig 354269..355567 (-) 1299 WP_105886178.1 trigger factor -
  Q7615_RS01850 (Q7615_01850) - 355935..356042 (+) 108 WP_236747310.1 PT domain-containing protein -
  Q7615_RS01855 (Q7615_01855) - 355993..356374 (+) 382 Protein_351 TonB-dependent receptor plug domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45610.20 Da        Isoelectric Point: 4.7350

>NTDB_id=792220 Q7615_RS01835 WP_005658618.1 352320..353555(-) (clpX) [Haemophilus influenzae strain 2016S11-301]
MTDKDKDLHCSFCGKEKGEVDKLIAGTGGYICNECIELCHSMLEESNDENLEESAVENKDKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=792220 Q7615_RS01835 WP_005658618.1 352320..353555(-) (clpX) [Haemophilus influenzae strain 2016S11-301]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAAGAAAAAGGCGAAGTAGATAAATTAATTGCTGGCAC
AGGCGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTAATGATGAAAACCTAGAGGAAA
GTGCGGTCGAAAATAAAGATAAATTGCCAACGCCTCACGAAATTCGCGCCCATCTGGATGATTATGTTATTGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGCAAAAGTAATATTTTACTTATAGGCCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCAGATGCAACCACATTAACGGAAGCTGGTTATGTGGGAGAAGATGTAGAGAATGTATTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGAGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATAGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGCGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTGA
TGAAATTTGGTTTAATTCCAGAATTTATCGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACGGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCAAAATTAGAATATTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.843

99.27

0.574
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.138

97.08

0.535