Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   Q7616_RS01575 Genome accession   NZ_CP131717
Coordinates   307191..308426 (-) Length   411 a.a.
NCBI ID   WP_005693035.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N21-284     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 302191..313426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS01540 (Q7616_01535) - 302683..303303 (-) 621 WP_011272188.1 YigZ family protein -
  Q7616_RS01545 (Q7616_01540) tusA 303419..303658 (+) 240 WP_005665561.1 sulfurtransferase TusA -
  Q7616_RS01550 (Q7616_01545) htpX 303701..304555 (-) 855 WP_162837812.1 protease HtpX -
  Q7616_RS01555 (Q7616_01550) - 304720..305109 (-) 390 WP_005630808.1 RidA family protein -
  Q7616_RS01560 (Q7616_01555) - 305166..305918 (-) 753 WP_105892153.1 VacJ family lipoprotein -
  Q7616_RS01565 (Q7616_01560) nusG 306071..306628 (-) 558 WP_342120280.1 transcription termination/antitermination protein NusG -
  Q7616_RS01570 (Q7616_01565) secE 306630..307046 (-) 417 WP_005658616.1 preprotein translocase subunit SecE -
  Q7616_RS01575 (Q7616_01570) clpX 307191..308426 (-) 1236 WP_005693035.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  Q7616_RS01580 (Q7616_01575) clpP 308436..309047 (-) 612 WP_257003823.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  Q7616_RS01585 (Q7616_01580) tig 309140..310438 (-) 1299 WP_005661950.1 trigger factor -
  Q7616_RS01590 (Q7616_01585) - 310740..310853 (+) 114 Protein_309 hypothetical protein -
  Q7616_RS01595 (Q7616_01590) - 310810..310902 (+) 93 WP_240317951.1 PT domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45749.32 Da        Isoelectric Point: 4.7428

>NTDB_id=792155 Q7616_RS01575 WP_005693035.1 307191..308426(-) (clpX) [Haemophilus influenzae strain 2016N21-284]
MTDKDKDLHCSFCGKEKGEVDRLIAGTDGYICNECIELCHSMLEESHDKNLEESAVENEEKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFSGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=792155 Q7616_RS01575 WP_005693035.1 307191..308426(-) (clpX) [Haemophilus influenzae strain 2016N21-284]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAGGAAAAAGGCGAAGTAGATAGATTAATTGCTGGCAC
AGACGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTCATGATAAAAATTTAGAGGAAA
GTGCGGTAGAAAATGAAGAAAAATTACCAACGCCTCACGAAATTCGCGCTCATCTAGATGATTATGTTATTGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGTAAAAGTAATATTTTACTTATAGGCCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCGGATGCAACCACATTAACGGAAGCTGGTTATGTGGGGGAAGATGTGGAGAATGTGTTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGAGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGCGGCGGTGCATTTTCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGACTTAA
TGAAATTTGGTTTAATTCCAGAATTTATTGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACGGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCAAAATTAGAATATTAG

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.353

99.27

0.569
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56

97.324

0.545